BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0304800 Os03g0304800|AK062656
         (88 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16146.1  | chr4:9142663-9144356 REVERSE LENGTH=103             89   4e-19
AT1G69510.1  | chr1:26126779-26127725 FORWARD LENGTH=138           79   4e-16
AT5G64130.3  | chr5:25664547-25665339 REVERSE LENGTH=141           69   5e-13

>AT4G16146.1 | chr4:9142663-9144356 REVERSE LENGTH=103
          Length = 102

 Score = 89.4 bits (220), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 57/80 (71%), Gaps = 2/80 (2%)

Query: 10 LASMEEEACIEKKYGGIAPKK-PLISKDHERAYFDSADWVLGKQAANSNG-SKAAVETLK 67
           +  +E      KYGG+ PKK PLISKD +RA+FDSADW L KQ A+ +  + AA+E L+
Sbjct: 13 FSQQQESTSGANKYGGLVPKKKPLISKDSKRAFFDSADWALLKQEASIDQRTIAAIEKLR 72

Query: 68 PKLKRTPHHQLPPRKPTCAS 87
          PKL+RTP  QL PR+PTCA+
Sbjct: 73 PKLQRTPRKQLSPRRPTCAT 92



>AT1G69510.1 | chr1:26126779-26127725 FORWARD LENGTH=138
          Length = 137

 Score = 79.3 bits (194), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 46/64 (71%), Gaps = 3/64 (4%)

Query: 15 EEACIEKKYGGIAPKK-PLISKDHERAYFDSADWVLGKQAANSNGSKAAVETLKPKLKRT 73
          EE  I+KKYGG+ PKK PLISKDHERA+FDSADW LGKQ       K  +E L+PKL+ T
Sbjct: 26 EENAIKKKYGGLLPKKIPLISKDHERAFFDSADWALGKQKGQK--PKGPLEALRPKLQPT 83

Query: 74 PHHQ 77
          P  Q
Sbjct: 84 PQQQ 87



>AT5G64130.3 | chr5:25664547-25665339 REVERSE LENGTH=141
          Length = 140

 Score = 68.9 bits (167), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 54/104 (51%), Gaps = 29/104 (27%)

Query: 11  ASMEEEACIEKKYGGIAPKKP-LISK-------------------------DHERAYFDS 44
           +S +EEA ++KKYGG+ PKKP LISK                         DHERAYFDS
Sbjct: 23  SSQQEEAVVKKKYGGLMPKKPPLISKVSEVTGLIRDFGVSFLVFLRCVYNQDHERAYFDS 82

Query: 45  ADWVLGKQAANSNGSKAAVETLKPKLKRTPHHQLPPRKPTCASS 88
           ADW LGKQ       K  +E L+PKL+ T   Q   RK  CA S
Sbjct: 83  ADWALGKQGVAK--PKGPLEALRPKLQPT-QQQTRYRKSPCAPS 123



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.126    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,157,719
Number of extensions: 76360
Number of successful extensions: 144
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 3
Length of query: 88
Length of database: 11,106,569
Length adjustment: 59
Effective length of query: 29
Effective length of database: 9,489,025
Effective search space: 275181725
Effective search space used: 275181725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 104 (44.7 bits)