BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0299700 Os12g0299700|AK071145
(333 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0299700 Conserved hypothetical protein 666 0.0
Os11g0580500 250 8e-67
Os11g0545000 Conserved hypothetical protein 243 1e-64
Os02g0511800 Conserved hypothetical protein 236 2e-62
Os08g0109600 235 3e-62
Os06g0355900 174 1e-43
Os08g0537500 159 2e-39
Os12g0622900 Mov34/MPN/PAD-1 family protein 99 4e-21
Os03g0350100 Similar to SAR DNA-binding protein-like protein 83 3e-16
Os11g0544900 82 4e-16
Os03g0400800 73 2e-13
>Os12g0299700 Conserved hypothetical protein
Length = 333
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/333 (96%), Positives = 321/333 (96%)
Query: 1 MTGKRXXXXXXXXXXXXKRGCSATRTATAGSIAGVDHNTYHCLIVLVLFETPSGFAMFGM 60
MTGKR KRGCSATRTATAGSIAGVDHNTYHCLIVLVLFETPSGFAMFGM
Sbjct: 1 MTGKRSTSTSTSTSTSSKRGCSATRTATAGSIAGVDHNTYHCLIVLVLFETPSGFAMFGM 60
Query: 61 SGDRLIQPNALQEIWANFGVDYRVSKFIWLKEFREIKDKSSAINHDTGVSCDLAEMIMKW 120
SGDRLIQPNALQEIWANFGVDYRVSKFIWLKEFREIKDKSSAINHDTGVSCDLAEMIMKW
Sbjct: 61 SGDRLIQPNALQEIWANFGVDYRVSKFIWLKEFREIKDKSSAINHDTGVSCDLAEMIMKW 120
Query: 121 HHPGQKMAVGKPEYKEIIERSLSVPCMFDEIVMEVMWGLKNLMHVLVPQEKMKLSKDDYL 180
HHPGQKMAVGKPEYKEIIERSLSVPCMFDEIVMEVMWGLKNLMHVLVPQEKMKLSKDDYL
Sbjct: 121 HHPGQKMAVGKPEYKEIIERSLSVPCMFDEIVMEVMWGLKNLMHVLVPQEKMKLSKDDYL 180
Query: 181 PMSQGLYMLLNRYGLDVKPEMVTDSIIKLACFLLDCEYCDVKNSKHLRWTGEYIEKRSGI 240
PMSQGLYMLLNRYGLDVKPEMVTDSIIKLACFLLDCEYCDVKNSKHLRWTGEYIEKRSGI
Sbjct: 181 PMSQGLYMLLNRYGLDVKPEMVTDSIIKLACFLLDCEYCDVKNSKHLRWTGEYIEKRSGI 240
Query: 241 KCLDWDLMKLATGIKIICYPTERSTAEEAMFTQDELSKLVKDAHKYEGKIRKRSFMNAYS 300
KCLDWDLMKLATGIKIICYPTERSTAEEAMFTQDELSKLVKDAHKYEGKIRKRSFMNAYS
Sbjct: 241 KCLDWDLMKLATGIKIICYPTERSTAEEAMFTQDELSKLVKDAHKYEGKIRKRSFMNAYS 300
Query: 301 EMVEARQLIPMAQKQLEDLVKEAKDACEAEQST 333
EMVEARQLIPMAQKQLEDLVKEAKDACEAEQST
Sbjct: 301 EMVEARQLIPMAQKQLEDLVKEAKDACEAEQST 333
>Os11g0580500
Length = 327
Score = 250 bits (639), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 138/312 (44%), Positives = 185/312 (59%), Gaps = 18/312 (5%)
Query: 21 CSATRTATAGSIAGVDHNTYHCLIVLVLFETPSGFAMFGMSGDRLIQPNALQEIWANFGV 80
CS A +G+ D H L L+LFETPSGFA+F + G + P+AL+
Sbjct: 27 CSLKEIAASGAPGAEDFVRNHGL-HLLLFETPSGFAIFSLCGAEIHIPDALE-------- 77
Query: 81 DYRVSKFIWLKEFREIKDKSSAINHDTGVSCDLAEMIMKWHHPGQKMAVGKPEYKEIIER 140
IWLKEF++ D S+AIN TGV+ L +MIM+W PGQK+ VGKPEYK IE
Sbjct: 78 ------IIWLKEFQKFDDNSNAINVGTGVNKQLTDMIMQWRRPGQKLVVGKPEYKSTIET 131
Query: 141 SLSVPCMFDEIVMEVMWGLKNLMHVLVPQEKMKLSKDDYLPMSQGLYMLLNRYGLDVKPE 200
L +PC+ DE+VMEVMWG+K M VP E+ L K+D LPMSQGL M L+RYG DVKPE
Sbjct: 132 FLGIPCLHDEVVMEVMWGMKRFMSNFVPAEESNLPKEDSLPMSQGLLMFLSRYGFDVKPE 191
Query: 201 MVTDSIIKLACFLLDCEYCDVKNSKHLRWTGEYIEKRSGIKCLDWDLMKLATGIKIICYP 260
MV + I++ A L C+ + K + L G Y+++ SGI +WD +KLAT KIIC
Sbjct: 192 MVNEDIVRAAATLFHCDIIEKKCCRALLDVGHYLKRESGIDYENWDTLKLATAFKIIC-- 249
Query: 261 TERSTAEEAMFTQDELSKLVKDAHKYEGKIRKRSFMNAYSEMVEARQLIPMAQKQLEDLV 320
+ + + MF+ D SKL DA KY+ + R + Y +V A + + + +L LV
Sbjct: 250 SRKIGDSDEMFSDDVQSKLPDDADKYKDLVYARDCLRLYENLVAAYNVRAVKKDELALLV 309
Query: 321 KEAKDACEAEQS 332
K A +A EAEQ+
Sbjct: 310 KRA-NADEAEQA 320
>Os11g0545000 Conserved hypothetical protein
Length = 340
Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/303 (44%), Positives = 188/303 (62%), Gaps = 6/303 (1%)
Query: 27 ATAGSIAGVDHNTYHCLIVLVLFETPSGFAMFGMSGDRLIQPNALQEIWANFGVDYRVSK 86
A +G+ VD H L +L+L ETPSGF++F + G + P+A+Q IWA FG YR S
Sbjct: 32 AASGAPGAVDFVKNHGLYLLLL-ETPSGFSIFSLCGVYIHLPDAIQNIWAMFGT-YRSSH 89
Query: 87 -FIWLKEFREIKDKSSAINHDTGVSCDLAEMIMKWHHPGQKMAVGKPEYKEIIERSLSVP 145
IWLKEF++ DKSSAIN DTGV+ L EMIMKW P QK+ VGKPEYK IIE +L +P
Sbjct: 90 DVIWLKEFQKFDDKSSAINVDTGVNKQLTEMIMKWRRPRQKLVVGKPEYKSIIENTLGIP 149
Query: 146 CMFDEIVMEVMWGLKNLMHVLVPQEKMKLSKDDYLPMSQGLYMLLNRYGLDVKPEMVTDS 205
C+ DE+VM+VMW +K L+ VP E +L+++D L MSQGL M L+RYG ++KPEMV +
Sbjct: 150 CLCDEVVMDVMWAMKRLIRYFVPTETPELAEEDSLTMSQGLRMFLSRYGFEIKPEMVYND 209
Query: 206 IIKLACFLLDCEYCDVKNSKHLRWTGEYIEKRSGIKCLDWDLMKLATGIKIICYPTERST 265
I++ A + C+ + +HL+ G +++ SGI +W +KLAT KIIC + +
Sbjct: 210 IVRAASIVFRCDAVE-DLYEHLQHLGRHLKNVSGIDYENWGTVKLATAFKIIC--SRKID 266
Query: 266 AEEAMFTQDELSKLVKDAHKYEGKIRKRSFMNAYSEMVEARQLIPMAQKQLEDLVKEAKD 325
+ MF+ D SKL+ DA KY+ + + Y +++ L QL +LVK A+
Sbjct: 267 KSDEMFSDDVRSKLLDDADKYKDLVFSTGCIANYKKILGLNILRNDKMDQLAELVKVARI 326
Query: 326 ACE 328
E
Sbjct: 327 KAE 329
>Os02g0511800 Conserved hypothetical protein
Length = 289
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/284 (46%), Positives = 167/284 (58%), Gaps = 22/284 (7%)
Query: 71 LQEIWANFGVDYRVSKFIWLKEFREIKDKSSAINHDTGVSCDLAEMIMKWHHPGQKMAVG 130
+++IW NF ++YR +W F+ DKS AIN DTGV L MI K+H G K+AVG
Sbjct: 1 MEDIWQNFAMEYRAKFVVWRLAFQVFTDKSLAINCDTGVDDQLNLMITKYHRKGGKIAVG 60
Query: 131 KPEYKEIIERSLSVPCMFDEIVMEVMWGLKNLMHVLVPQEKMKLSKDDYLPMSQGLYMLL 190
KPEYK IIE +L + C++DE VMEVMWGL NLMH LVP+E +LSK+D L MSQGL MLL
Sbjct: 61 KPEYKTIIEANLGISCLYDEFVMEVMWGLTNLMHSLVPEENSQLSKEDRLQMSQGLKMLL 120
Query: 191 NRYGLDVKPEMVTDSIIKLACFLLDCEYCDVKNSKHLRWTGEYIEKRSGIKCLDWDLMKL 250
NRYG DVKP MV I++ A L DC+ C+ KN+ LR G + S I DW L+KL
Sbjct: 121 NRYGFDVKPGMVNKRILEAASDLYDCDDCEKKNNWSLRRAGRNLMDISSINSEDWGLLKL 180
Query: 251 ATGIKIICYPTERSTA----------------------EEAMFTQDELSKLVKDAHKYEG 288
+T + I+CYP E+ A + MF+ D LSKLV DA KY
Sbjct: 181 STALMIVCYPEEKIIACLLKHSTDLLIASYPRREVIEYSQKMFSPDVLSKLVTDAPKYGI 240
Query: 289 KIRKRSFMNAYSEMVEARQLIPMAQKQLEDLVKEAKDACEAEQS 332
I+KR+ + EMV Q +K L L+ EA EAEQ+
Sbjct: 241 WIKKRTSKRIHEEMVFLYQQRIEKRKLLATLIGEATKVYEAEQA 284
>Os08g0109600
Length = 348
Score = 235 bits (600), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 128/293 (43%), Positives = 186/293 (63%), Gaps = 16/293 (5%)
Query: 44 IVLVLFETPSGFAMFGMSGDRLIQPNALQEIWANFGVDYRVSKFIWLKEFREIKDKSSAI 103
++LVLFETP+GFA+F G +L++P+AL +WLK+F+ +DK+SA+
Sbjct: 34 VILVLFETPTGFALFSYDGIKLLRPHALMHP-------------VWLKDFQAFEDKASAL 80
Query: 104 NHDTGVSCDLAEMIMKWHHPGQKMAVGKPEYKEIIERSLSVPCMFDEIVMEVMWGLKNLM 163
+ DTGVS LA MI ++ PGQ +AVGK EY II+ +L + C+++ VME+MWGL NL
Sbjct: 81 SLDTGVSEQLAGMIRRFICPGQTLAVGKQEYVTIIQSNLGIKCLWNAEVMELMWGLNNLK 140
Query: 164 HVLVPQEKMKLSKDDYLPMSQGLYMLLNRYGL-DVKPEMVTDSIIKLACFLLDCEYCDVK 222
LVP K +LSK+D LPM +G+ LN+YG D+KPEMVT SII+ L + +Y K
Sbjct: 141 EHLVPDGKSELSKEDCLPMCEGMKFTLNKYGFGDLKPEMVTRSIIEATGLLYETDYHVRK 200
Query: 223 NSKHLRWTGEYIEKRSGIKCLDWDLMKLATGIKIICYPTE--RSTAEEAMFTQDELSKLV 280
+ + +R+ G++++K SGI DWDL+KLAT I ++CYP + D+ SKLV
Sbjct: 201 HGESMRYAGKHLKKISGINAEDWDLLKLATAIMMLCYPNGEYKLVGNLPELFGDDYSKLV 260
Query: 281 KDAHKYEGKIRKRSFMNAYSEMVEARQLIPMAQKQLEDLVKEAKDACEAEQST 333
DA KY+G RK S + AY+EMV +R++ A ++L+ LV A+ + ST
Sbjct: 261 DDAPKYKGIFRKLSCLRAYAEMVRSRRIRSKAARRLDSLVTAAERIYDELGST 313
>Os06g0355900
Length = 207
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 123/175 (70%), Gaps = 1/175 (0%)
Query: 88 IWLKEFREIKDKSSAINHDTGVSCDLAEMIMKWHHPGQKMAVGKPEYKEIIERSLSVPCM 147
+WLKEF+ +DK+SA++ DTGVS LA MI ++ PGQ +AVGK EY II+ +L + C+
Sbjct: 11 VWLKEFQAFEDKASALSLDTGVSEQLAGMIRRFICPGQTLAVGKQEYVTIIQSNLGIKCL 70
Query: 148 FDEIVMEVMWGLKNLMHVLVPQEKMKLSKDDYLPMSQGLYMLLNRYGL-DVKPEMVTDSI 206
++ VME+MWGL NL LVP K +LSK+D LPM +G+ LN+YG D+KPEMVT SI
Sbjct: 71 WNAEVMELMWGLNNLKEHLVPDGKSELSKEDCLPMCEGMKFTLNKYGFGDLKPEMVTRSI 130
Query: 207 IKLACFLLDCEYCDVKNSKHLRWTGEYIEKRSGIKCLDWDLMKLATGIKIICYPT 261
I+ L + +Y K+ + +R+ G+++++ SGI DWDL+KLAT I ++CYP
Sbjct: 131 IEATGLLYETDYHVRKHGESMRYAGKHLKETSGINAEDWDLLKLATAIMMLCYPN 185
>Os08g0537500
Length = 271
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 154/281 (54%), Gaps = 44/281 (15%)
Query: 44 IVLVLFETPSGFAMFGMSGDRLIQPNALQEIWANFGVDYRVSKFIWLKEFREIKDKSSAI 103
+V +LFETPSGFA+F + + NA++ +WLK+F++ +DKS+AI
Sbjct: 29 LVWLLFETPSGFAIFSFNSYIFEEENAIE---------------LWLKQFQKFEDKSAAI 73
Query: 104 NHDTGVSCDLAEMIMKWHHPGQKMAVGKPEYKEIIERSLSVPCMFDEIVMEVMWGLKNLM 163
N TG+ +L +M+ W G+K+ VG EYKEIIE ++VMWG+KNLM
Sbjct: 74 NCTTGLGEELRDMLKIWCRRGEKLMVGSQEYKEIIEADQE---------LKVMWGIKNLM 124
Query: 164 HVLVPQEKMKLSKDDYLPMSQGLYMLLNRYGLDVKPEMVTDSIIKLACFLLDCEYCDVKN 223
H+LVP+E+ L+K++ LP + + I++ AC+L C++ + ++
Sbjct: 125 HILVPEEQKVLTKEERLP--------------------INNDIVETACYLYHCDFLEKRH 164
Query: 224 SKHLRWTGEYIEKRSGIKCLDWDLMKLATGIKIICYPTERSTAEEAMFTQDELSKLVKDA 283
SK L + ++ K SG+ +WD MKL T +K I P E MF+ DEL K+ KDA
Sbjct: 165 SKGLHMSDYHLLKISGLNSSEWDTMKLVTALKKITRPGEEIEHPPEMFSSDELLKIEKDA 224
Query: 284 HKYEGKIRKRSFMNAYSEMVEARQLIPMAQKQLEDLVKEAK 324
KY+ KI K + ++++V + + + ++ LV+ A+
Sbjct: 225 DKYKDKIYKTAVSEIWNDLVCSYSIKKEKLRHMQFLVEAAE 265
>Os12g0622900 Mov34/MPN/PAD-1 family protein
Length = 499
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 93/168 (55%), Gaps = 6/168 (3%)
Query: 47 VLFETPSGFAMFGMSGDRLIQPNALQEIWANFGVDYRVSKFIWLKEFREIKDKSSAINHD 106
+LFETPSGFAMF +S P ++IW++F + + + F E+ DKS ++D
Sbjct: 221 MLFETPSGFAMFRVSDVLFRYP---EDIWSSFTDPHTAHQVVRTIGFIEVGDKSVVWDND 277
Query: 107 TGVSCDLAEMIMKWHHPGQKMAVGKPEYKEIIERSLSVPCMFD-EIVMEVMWGLKNLMHV 165
G D+ I+K+ P + + V + K IIE++L++ C F+ IV E++WGL +
Sbjct: 278 IGPGEDIEHFILKF--PIKSLVVPDAQLKFIIEKNLNISCWFNGRIVPELIWGLNYALDE 335
Query: 166 LVPQEKMKLSKDDYLPMSQGLYMLLNRYGLDVKPEMVTDSIIKLACFL 213
VP+EK LS + + P+S+ L+ L YG + P+++ I +L
Sbjct: 336 FVPREKGNLSNERHFPLSKQLHEQLKAYGFSISPQLINREFITSFGYL 383
>Os03g0350100 Similar to SAR DNA-binding protein-like protein
Length = 568
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 13/176 (7%)
Query: 45 VLVLFETPSGFAMFGMSGDRLIQPNALQEIWANFGVDYRVSKFIWLKEFREIKDKSSAIN 104
+LVLFETP+GFA+F + + + + ++++W F K + LK F + ++ S A++
Sbjct: 1 MLVLFETPAGFALFKVLDEGKL--DKVEDLWKEFTTSDSARKVVELKAFNKFENTSDALS 58
Query: 105 H-----DTGVSCDLAEMIMKWHHPGQKMAVGKPEYKEIIERSLSVPCMFDEIVMEVMWGL 159
D+ + L + + K H G+ +AV + I+ L + C+ + VME+M GL
Sbjct: 59 AATLIIDSKPTKGLRKFLQK-HCEGETLAVADSKLGNAIKEKLKIDCLHNSAVMELMRGL 117
Query: 160 KNLMHVLVPQEKMKLSKDDYLPMSQGLYMLLNRYGLDVKPEMVTDSIIKLACFLLD 215
+N + L+ L D PMS GL L+RY L PE V D++I A LLD
Sbjct: 118 RNQLTELIS----GLGAQDLGPMSLGLSHSLSRYKLKFSPEKV-DTMIIQAIGLLD 168
>Os11g0544900
Length = 249
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 49/65 (75%), Gaps = 4/65 (6%)
Query: 88 IWLKEFREIKDKSSAINHDTGVSCDLAEMIMKWHHPGQKMAVGKPEYKEIIERSLSVPCM 147
IWLKEF++ DKSSAIN DTGV+ L EMIMKW P QK+ VGKPEYK IIE +L +
Sbjct: 62 IWLKEFQKFDDKSSAINVDTGVNKQLTEMIMKWRRPRQKLVVGKPEYKSIIETTL----V 117
Query: 148 FDEIV 152
+++IV
Sbjct: 118 YNDIV 122
>Os03g0400800
Length = 646
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 22/104 (21%)
Query: 41 HCLIVLVLFETPSGFAMFGMSGDRLIQPNALQEIWANFGVDYRVSKFIWLKEFREIKDKS 100
H + VLFETPSGFA+F G +L++PNA+Q+IWA+F +Y + + LKEF+ +DK
Sbjct: 401 HGGCINVLFETPSGFAIFAYDGIKLLKPNAMQDIWADFVSEYVAKRAVALKEFKTFEDKL 460
Query: 101 SAINHDTGVSCDLAEMIMKWHHPGQKMAVGKPEYKEIIERSLSV 144
+ QK+ VG Y++IIE+ L +
Sbjct: 461 AL----------------------QKLPVGNDNYRDIIEKRLVI 482
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,126,540
Number of extensions: 393262
Number of successful extensions: 857
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 839
Number of HSP's successfully gapped: 11
Length of query: 333
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 232
Effective length of database: 11,762,187
Effective search space: 2728827384
Effective search space used: 2728827384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)