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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0400800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.26 (0.0427) R2 : 0.507
β1 : -1.58 (0.159) R2dD : 0.119 R2D : 0.101
β2 : 1.53 (0.106) R2dC : 0.232 R2C : 0.176
β3 : 1.34 (0.202) R2dE : 0.0549 R2E : 0.0152
β4 : -2.45 (0.429) R2dD*C : 0.0357 R2D*C : 0.0121
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.735 (0.0941) R2dN8 : 0.0965 R2N8 : 0.137
σ : 0.787
deviance : 285.61
__
_____
C
peak time of C : 20.9
E
wheather : temperature
threshold : 15.31
memory length : 4
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
285.78 0.794 5.26 -1.56 1.52 1.34 -2.43 0.145 0.739 20.9 15.3 8 -- --
285.61 0.787 5.26 -1.58 1.53 1.34 -2.45 -- 0.735 20.9 15.31 4 -- --
304.07 0.812 5.23 -1.28 1.53 1.31 -- 1.61 0.799 20.9 10.9 3 -- --
306.1 0.815 5.26 -1.49 1.54 1.3 -- -- 0.74 20.9 15.3 3 -- --
412.03 0.945 5.13 -1.1 -- 1.56 -- 2.97 0.961 -- 14.4 377 -- --
306.42 0.821 5.22 -1.3 1.51 -- -2.41 -- 0.93 20.1 -- -- -- --
323.56 0.842 5.22 -1.23 1.53 -- -- -- 0.93 19.9 -- -- -- --
394.68 0.925 5.23 -1.67 -- 1.83 -- -- 0.646 -- 15.4 511 -- --
359.32 0.883 5.2 -- 1.52 0.575 -- -- 0.991 20.3 16.56 3 -- --
450.25 0.992 5.18 -1.25 -- -- -- -- 0.91 -- -- -- -- --
363.56 0.892 5.19 -- 1.54 -- -- -- 1.07 19.8 -- -- -- --
459.46 0.998 5.18 -- -- 1.07 -- -- 0.896 -- 21.1 494 -- --
491.38 1.03 5.15 -- -- -- -- -- 1.05 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 274.86 temperature 15 10 > th dose dependent rect. 9 20
3 275.64 atmosphere 1015 90 < th dose dependent rect. 9 16
9 276.46 temperature 15 10 > th dose dependent rect. 9 17
11 276.90 atmosphere 1015 10 < th dose dependent rect. 9 17
30 278.06 temperature 15 10 > th dose dependent rect. 8 23
48 278.93 temperature 15 270 > th dose dependent rect. 21 15
52 279.04 temperature 20 10 > th dose dependent rect. 9 5
60 279.24 temperature 20 90 > th dose dependent rect. 9 4
77 279.63 atmosphere 1015 10 < th dose dependent rect. 9 20
86 279.79 temperature 10 270 > th dose dependent rect. 6 21
88 279.83 temperature 20 270 > th dose dependent rect. 9 2
96 279.92 temperature 20 10 > th dose dependent rect. 9 7
103 280.06 wind 3 10 > th dose dependent rect. 6 1
108 280.12 wind 3 10 > th dose independent rect. 3 4
110 280.14 humidity 80 10 < th dose independent rect. 5 1
115 280.14 humidity 80 10 < th dose dependent rect. 5 1
162 280.77 wind 3 10 > th dose dependent rect. 3 4
207 281.15 temperature 20 270 > th dose independent rect. 8 18
242 281.54 temperature 25 30 > th dose independent rect. 9 5
249 281.66 temperature 15 270 > th dose dependent rect. 17 22
253 281.72 temperature 25 270 > th dose independent rect. 9 2
284 281.92 temperature 25 30 > th dose independent rect. 9 7
285 281.92 temperature 20 270 > th dose independent rect. 6 21
302 282.04 temperature 20 30 > th dose independent rect. 9 20
305 282.07 temperature 25 270 > th dose independent rect. 8 4
332 282.27 temperature 10 90 > th dose dependent sin 3 NA
357 282.45 temperature 15 10 > th dose dependent rect. 17 23
387 282.66 temperature 15 10 > th dose dependent sin 2 NA
506 283.57 temperature 30 90 < th dose dependent sin 5 NA
509 283.59 radiation 1 270 > th dose dependent rect. 8 4
536 283.77 atmosphere 995 270 > th dose dependent rect. 11 10
561 283.93 temperature 30 270 < th dose dependent sin 7 NA
577 284.02 wind 3 720 < th dose independent rect. 11 2
634 284.40 wind 1 4320 < th dose dependent rect. 20 2
661 284.59 atmosphere 1015 10 < th dose dependent sin 18 NA
704 284.79 atmosphere 1010 270 < th dose dependent rect. 3 2
710 284.80 atmosphere 1010 90 < th dose dependent rect. 3 5
747 284.97 atmosphere 1005 90 < th dose independent rect. 2 6
754 284.99 temperature 30 270 < th dose dependent rect. 23 18
758 285.01 atmosphere 1010 270 < th dose dependent rect. 1 6
771 285.07 radiation 1 10 > th dose dependent rect. 9 10
801 285.14 atmosphere 1010 10 < th dose dependent rect. 2 7
817 285.18 radiation 10 270 > th dose independent rect. 8 3
819 285.19 atmosphere 1015 720 < th dose dependent rect. 8 5
845 285.28 wind 5 270 < th dose independent rect. 8 5
855 285.32 radiation 1 10 > th dose dependent rect. 9 7
874 285.40 temperature 15 10 > th dose dependent rect. 21 23
893 285.46 radiation 40 270 < th dose independent rect. 10 22
897 285.46 radiation 1 10 > th dose dependent rect. 9 22
908 285.50 radiation 20 30 > th dose independent rect. 9 5
921 285.53 temperature 20 10 > th dose dependent rect. 9 10
945 285.63 atmosphere 1005 270 < th dose independent rect. 3 2
946 285.63 atmosphere 1010 270 < th dose independent rect. 8 3
949 285.65 atmosphere 1015 90 < th dose dependent rect. 9 6
959 285.68 atmosphere 1015 720 < th dose dependent rect. 9 2
994 285.81 humidity 80 4320 < th dose dependent rect. 7 1
998 285.82 atmosphere 1015 90 < th dose dependent rect. 9 4