FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0511800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.0379) R2 : 0.0141
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.204 (0.0798) R2dN8 : 0.0182 R2N8 : 0.0141
σ : 0.714
deviance : 234.12
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
222.65 0.701 3.32 0.128 0.0928 -0.339 1.07 -2.07 -0.163 3.02 19.57 268 -- --
229.89 0.706 3.39 -0.173 0.0964 -0.197 0.57 -- -0.296 2.68 24.1 321 -- --
225.39 0.699 3.33 0.0774 0.127 -0.376 -- -2 -0.189 4.17 19.58 349 -- --
230.74 0.707 3.39 -0.173 0.113 -0.184 -- -- -0.316 3.93 24 289 -- --
225.93 0.7 3.33 0.0921 -- -0.308 -- -1.81 -0.173 -- 19.6 352 -- --
232.25 0.714 3.37 -0.0957 0.0461 -- 0.582 -- -0.214 1.16 -- -- -- --
233.38 0.715 3.37 -0.118 0.0867 -- -- -- -0.219 4.87 -- -- -- --
231.13 0.708 3.39 -0.201 -- -0.254 -- -- -0.311 -- 24.6 923 -- --
231.66 0.709 3.38 -- 0.125 -0.171 -- -- -0.276 3.89 23.9 278 -- --
233.78 0.714 3.37 -0.114 -- -- -- -- -0.217 -- -- -- -- --
233.74 0.715 3.36 -- 0.0846 -- -- -- -0.206 4.91 -- -- -- --
231.99 0.709 3.38 -- -- -0.232 -- -- -0.285 -- 24.4 1285 -- --
234.12 0.714 3.37 -- -- -- -- -- -0.204 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 214.56 temperature 20 270 < th dose independent rect. 23 9
7 216.45 atmosphere 1000 10 < th dose dependent rect. 10 2
9 216.63 atmosphere 1000 90 < th dose dependent rect. 10 1
24 217.36 temperature 20 30 < th dose independent rect. 6 2
27 217.52 temperature 20 90 < th dose dependent rect. 6 1
36 217.91 temperature 20 270 > th dose independent rect. 23 12
37 217.93 atmosphere 1000 90 < th dose independent rect. 10 1
40 218.07 temperature 20 270 < th dose independent rect. 23 16
45 218.18 temperature 20 270 < th dose independent sin 7 NA
49 218.22 wind 1 10 < th dose independent rect. 12 1
51 218.22 wind 1 10 < th dose dependent rect. 12 1
70 218.50 temperature 30 90 > th dose dependent rect. 10 2
71 218.52 temperature 20 270 > th dose independent sin 7 NA
100 219.42 radiation 1 90 < th dose dependent rect. 7 4
117 219.89 temperature 30 90 > th dose dependent rect. 17 19
142 220.12 temperature 20 270 > th dose independent rect. 23 16
146 220.19 temperature 20 270 < th dose dependent rect. 24 8
160 220.43 atmosphere 1000 10 < th dose dependent rect. 4 9
168 220.62 radiation 1 30 < th dose dependent rect. 7 1
223 221.10 wind 1 10 < th dose dependent rect. 11 5
271 221.57 temperature 20 270 < th dose dependent rect. 3 1
287 221.81 humidity 90 10 > th dose dependent rect. 7 14
296 221.91 temperature 20 270 > th dose independent rect. 20 22
326 222.08 temperature 20 270 > th dose independent rect. 21 20
357 222.26 atmosphere 1015 10 < th dose dependent rect. 3 9
410 222.40 temperature 20 90 > th dose independent rect. 2 16
413 222.42 temperature 20 4320 > th dose independent rect. 13 11
421 222.49 temperature 20 4320 < th dose independent rect. 13 11
438 222.58 atmosphere 1005 10 < th dose dependent rect. 24 13
516 222.84 atmosphere 1000 720 < th dose dependent rect. 24 12
540 222.94 temperature 20 270 > th dose independent rect. 13 23
546 222.96 temperature 20 30 < th dose independent rect. 2 2
552 222.97 temperature 20 4320 < th dose independent sin 17 NA
561 222.99 temperature 20 4320 > th dose independent sin 17 NA
643 223.18 temperature 20 270 > th dose independent rect. 23 23
665 223.23 temperature 20 4320 < th dose independent rect. 20 4
671 223.25 temperature 20 30 < th dose dependent rect. 2 6
689 223.29 temperature 25 270 < th dose dependent sin 8 NA
725 223.35 temperature 30 30 > th dose independent rect. 11 1
729 223.35 temperature 30 90 > th dose dependent sin 9 NA
730 223.36 temperature 20 270 < th dose independent rect. 10 22
732 223.37 temperature 20 4320 > th dose independent rect. 20 4
750 223.39 temperature 20 4320 < th dose independent rect. 21 2
752 223.39 wind 3 30 > th dose independent rect. 23 17
753 223.39 wind 3 30 > th dose independent rect. 21 19
756 223.39 temperature 20 720 > th dose dependent rect. 20 6
772 223.43 temperature 20 4320 > th dose independent rect. 21 2
817 223.49 humidity 80 90 < th dose independent rect. 24 6
820 223.49 temperature 20 10 < th dose dependent rect. 2 2
848 223.53 humidity 80 90 < th dose dependent rect. 1 5
882 223.57 temperature 20 720 > th dose dependent rect. 20 10
896 223.59 atmosphere 1015 720 < th dose dependent rect. 23 3
900 223.60 temperature 15 270 > th dose dependent sin 8 NA
922 223.64 temperature 20 270 < th dose independent rect. 14 21
927 223.65 wind 1 10 < th dose independent rect. 11 5
962 223.68 temperature 20 270 < th dose independent no NA NA
983 223.70 radiation 1 90 < th dose independent rect. 7 4