Os11g0545000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0545000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.49 | 0.251 | 11.4 | -0.244 | 0.566 | 0.294 | 0.355 | -1.05 | -0.145 | 16.1 | 18.95 | 2434 | -- | -- |
| 29.57 | 0.253 | 11.4 | -0.127 | 0.564 | 0.581 | 0.44 | -- | -0.114 | 15.9 | 18.5 | 2397 | -- | -- |
| 28.82 | 0.25 | 11.4 | -0.25 | 0.567 | 0.299 | -- | -1.1 | -0.15 | 16.1 | 18.9 | 2496 | -- | -- |
| 30.1 | 0.256 | 11.4 | -0.144 | 0.583 | 0.616 | -- | -- | -0.123 | 16.1 | 18.5 | 2413 | -- | -- |
| 46.17 | 0.316 | 11.4 | -0.24 | -- | 0.219 | -- | -1.18 | -0.152 | -- | 18.99 | 2238 | -- | -- |
| 34.9 | 0.277 | 11.4 | 0.135 | 0.546 | -- | 0.52 | -- | -0.0133 | 16.2 | -- | -- | -- | -- |
| 35.65 | 0.28 | 11.4 | 0.141 | 0.549 | -- | -- | -- | -0.0104 | 16.2 | -- | -- | -- | -- |
| 48.09 | 0.323 | 11.4 | -0.107 | -- | 0.515 | -- | -- | -0.115 | -- | 18.67 | 2164 | -- | -- |
| 30.48 | 0.257 | 11.4 | -- | 0.576 | 0.53 | -- | -- | -0.0976 | 16.1 | 18.5 | 2414 | -- | -- |
| 51.96 | 0.337 | 11.3 | 0.119 | -- | -- | -- | -- | -0.025 | -- | -- | -- | -- | -- |
| 36.17 | 0.281 | 11.4 | -- | 0.547 | -- | -- | -- | -0.0261 | 16.2 | -- | -- | -- | -- |
| 48.31 | 0.324 | 11.4 | -- | -- | 0.451 | -- | -- | -0.0967 | -- | 18.71 | 2143 | -- | -- |
| 52.33 | 0.338 | 11.4 | -- | -- | -- | -- | -- | -0.0382 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.60 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 2 | 28.67 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 3 | 28.69 | radiation | 30 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 10 | 28.72 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 11 | 28.72 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 16 | 28.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 17 | 28.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 18 | 28.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 20 | 28.80 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 22 | 28.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 25 | 28.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 26 | 28.83 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 42 | 28.84 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 53 | 28.86 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 59 | 28.87 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 64 | 28.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 17 |
| 84 | 28.93 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 90 | 28.94 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 96 | 28.94 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 9 | NA |
| 110 | 28.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 114 | 28.97 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 122 | 28.98 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 144 | 29.00 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 147 | 29.00 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 9 |
| 153 | 29.00 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 22 | 12 |
| 158 | 29.01 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 169 | 29.01 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 193 | 29.03 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 204 | 29.04 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 220 | 29.05 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 224 | 29.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 19 |
| 227 | 29.06 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 238 | 29.07 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 240 | 29.07 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 248 | 29.07 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 11 |
| 251 | 29.07 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 272 | 29.09 | atmosphere | 995 | 43200 | < th | dose independent | sin | 7 | NA |
| 298 | 29.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 316 | 29.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 16 |
| 390 | 29.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 411 | 29.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 442 | 29.16 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 452 | 29.17 | humidity | 90 | 14400 | > th | dose independent | sin | 8 | NA |
| 464 | 29.17 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 486 | 29.18 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 16 |
| 487 | 29.18 | radiation | 30 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 628 | 29.23 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 629 | 29.23 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 630 | 29.23 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 5 |
| 643 | 29.24 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 645 | 29.24 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 652 | 29.24 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 13 |
| 671 | 29.25 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 720 | 29.27 | atmosphere | 995 | 43200 | > th | dose independent | sin | 7 | NA |
| 721 | 29.27 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 724 | 29.27 | wind | 7 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 725 | 29.27 | wind | 7 | 43200 | < th | dose independent | rect. | 21 | 4 |
| 737 | 29.27 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 763 | 29.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 9 |
| 860 | 29.31 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 895 | 29.32 | wind | 7 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 972 | 29.35 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 986 | 29.35 | wind | 5 | 43200 | > th | dose dependent | rect. | 21 | 6 |
| 993 | 29.35 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |