BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0545000 Os11g0545000|AK058871
         (340 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27120.1  | chr5:9541287-9543684 FORWARD LENGTH=534             55   8e-08
AT3G05060.1  | chr3:1413174-1415564 REVERSE LENGTH=534             53   2e-07

>AT5G27120.1 | chr5:9541287-9543684 FORWARD LENGTH=534
          Length = 533

 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 110/239 (46%), Gaps = 20/239 (8%)

Query: 50  LLLLETPSGFSIFSLCGVYIHLPDAIQNIWAMFGTYRSSHDVIWLKEFQKFDDKSSAINV 109
           L+L ETP GF+IF +      L + ++++   F T + +  ++ L  F KFD+ + A+  
Sbjct: 2   LILFETPGGFAIFKVLNEG-KLSN-VEDLGNEFSTAKLARKMVKLVAFDKFDNTAEALEA 59

Query: 110 DT----GVNKQLTEMIMKWRRPRQKLVVGKPEYKSIIENTLGIPCLCDEVVMDVMWAMKR 165
                 G   +     +K     + L V   +  +II+  L I C+ +  VM+++    R
Sbjct: 60  VAKLLEGTPSKGLRKFLKANCVGETLAVADSKLGNIIKEKLKIVCVHNNAVMELL----R 115

Query: 166 LIRYFVPTETPELAEEDSLTMSQGLRMFLSRYGFEIKPEMVYNDIVRAASIVFRCDAVED 225
            IR  +      L ++D   MS GL   L+RY  +   + V   I++A  ++   D   +
Sbjct: 116 GIRSQLTELISGLGDQDLGPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGLLDDLDKELN 175

Query: 226 LYEH--LQHLGRHLKNVSGIDYENWGTVKLATAFKIICSR----KIDKSDEMFSDDVRS 278
            Y     +  G H   ++ I  +N   +  A A K++ +R    K+D S E+ +D++ +
Sbjct: 176 TYAMRVREWFGWHFPELAKIVQDN---ILYAKAVKLMGNRINAAKLDFS-EILADEIEA 230



>AT3G05060.1 | chr3:1413174-1415564 REVERSE LENGTH=534
          Length = 533

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 14/180 (7%)

Query: 48  LYLLLLETPSGFSIFSLC--GVYIHLPDAIQNIWAMFGTYRSSHDVIWLKEFQKFDDKSS 105
           + L+L ET +GF++F +   G   +    ++++   F T  S+  ++ LK F+KFD+ S 
Sbjct: 1   MVLVLYETAAGFALFKVKDEGKMAN----VEDLCKEFDTPDSARKMVKLKAFEKFDNTSE 56

Query: 106 AINVDT----GVNKQLTEMIMKWRRPRQKLVVGKPEYKSIIENTLGIPCLCDEVVMDVMW 161
           A+        G   +     +K     + L V   +  ++I+  L I C+ +  VM+++ 
Sbjct: 57  ALEAVAKLLEGAPSKGLRKFLKANCQGETLAVADSKLGNVIKEKLKIDCIHNNAVMELL- 115

Query: 162 AMKRLIRYFVPTETPELAEEDSLTMSQGLRMFLSRYGFEIKPEMVYNDIVRAASIVFRCD 221
              R +R         L ++D   MS GL   L+RY  +   + V   I++A  ++   D
Sbjct: 116 ---RGVRSQFTELISGLGDQDLAPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGLLDDLD 172



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,738,568
Number of extensions: 268376
Number of successful extensions: 577
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 241
Effective length of database: 8,392,385
Effective search space: 2022564785
Effective search space used: 2022564785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)