BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0643800 Os11g0643800|J065087K23
(121 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0643800 Major facilitator superfamily protein 234 8e-63
Os03g0363600 Similar to Sugar transporter-like protein 111 1e-25
Os03g0363500 Similar to Sugar transporter-like protein 104 2e-23
Os05g0567800 Similar to Integral membrane protein 90 3e-19
Os05g0579000 Similar to Integral membrane protein 90 3e-19
Os05g0567700 Similar to Integral membrane protein 87 2e-18
>Os11g0643800 Major facilitator superfamily protein
Length = 121
Score = 234 bits (598), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MGVSSGASESLLPRAGGDGSLAMVIASTGVAVLGSFVFGVSIGYSAPTQSKIREDLQLSL 60
MGVSSGASESLLPRAGGDGSLAMVIASTGVAVLGSFVFGVSIGYSAPTQSKIREDLQLSL
Sbjct: 1 MGVSSGASESLLPRAGGDGSLAMVIASTGVAVLGSFVFGVSIGYSAPTQSKIREDLQLSL 60
Query: 61 SEYSVFGSIITIGAMIGAVASGHLADISGRKGAMRTSALVCIVGWLAIFFAQVRFLNLIL 120
SEYSVFGSIITIGAMIGAVASGHLADISGRKGAMRTSALVCIVGWLAIFFAQVRFLNLIL
Sbjct: 61 SEYSVFGSIITIGAMIGAVASGHLADISGRKGAMRTSALVCIVGWLAIFFAQVRFLNLIL 120
Query: 121 Q 121
Q
Sbjct: 121 Q 121
>Os03g0363600 Similar to Sugar transporter-like protein
Length = 515
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 73/93 (78%)
Query: 20 SLAMVIASTGVAVLGSFVFGVSIGYSAPTQSKIREDLQLSLSEYSVFGSIITIGAMIGAV 79
S++M++ ST VAV GSF FG +GYSAPTQS I +++ LS+S++++FGS++TIGAMIGAV
Sbjct: 68 SMSMLMLSTAVAVCGSFEFGTCVGYSAPTQSGIVDEVGLSISQFALFGSVLTIGAMIGAV 127
Query: 80 ASGHLADISGRKGAMRTSALVCIVGWLAIFFAQ 112
SG LAD GRK MR SA +CI GWL++ A+
Sbjct: 128 TSGRLADFLGRKMTMRISATICIFGWLSLHLAK 160
>Os03g0363500 Similar to Sugar transporter-like protein
Length = 533
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/93 (59%), Positives = 65/93 (69%)
Query: 20 SLAMVIASTGVAVLGSFVFGVSIGYSAPTQSKIREDLQLSLSEYSVFGSIITIGAMIGAV 79
SL MV +T VAV GSF FG +GYSAP Q+ I D LS SEY VFGS++TIGAMIGA+
Sbjct: 95 SLWMVFLATAVAVCGSFEFGTCVGYSAPAQAGIVNDFGLSNSEYGVFGSVLTIGAMIGAL 154
Query: 80 ASGHLADISGRKGAMRTSALVCIVGWLAIFFAQ 112
SG LAD GRK M +A++ IVGW I+FA
Sbjct: 155 TSGRLADSLGRKTTMGLAAIIGIVGWFTIYFAN 187
>Os05g0567800 Similar to Integral membrane protein
Length = 501
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 62/85 (72%)
Query: 28 TGVAVLGSFVFGVSIGYSAPTQSKIREDLQLSLSEYSVFGSIITIGAMIGAVASGHLADI 87
T + LG FG + G+S+PTQ I DL L+LSE+SVFGS+ +GAM+GA+ASG +A+
Sbjct: 66 TLIVALGPIQFGFTGGFSSPTQDAIIRDLDLTLSEFSVFGSLSNVGAMVGAIASGQMAEY 125
Query: 88 SGRKGAMRTSALVCIVGWLAIFFAQ 112
GRKG++ +A+ I+GWLAI FA+
Sbjct: 126 IGRKGSLMIAAIPNIIGWLAISFAK 150
>Os05g0579000 Similar to Integral membrane protein
Length = 501
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Query: 18 DGSLAMVIASTGVAVLGSFVFGVSIGYSAPTQSKIREDLQLSLSEYSVFGSIITIGAMIG 77
D S++ V+ + VA LG FG + G+S+PTQ I DL L+LSE+S+FGS+ +GAM+G
Sbjct: 57 DSSVSAVLCTLIVA-LGPIQFGFTCGFSSPTQDAIISDLGLTLSEFSLFGSLSNVGAMVG 115
Query: 78 AVASGHLADISGRKGAMRTSALVCIVGWLAIFFAQ 112
A+ASG +A+ GRKG++ +A+ I+GWLAI FA+
Sbjct: 116 AIASGQIAEYIGRKGSLMIAAIPNIIGWLAISFAK 150
>Os05g0567700 Similar to Integral membrane protein
Length = 200
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 62/85 (72%)
Query: 28 TGVAVLGSFVFGVSIGYSAPTQSKIREDLQLSLSEYSVFGSIITIGAMIGAVASGHLADI 87
T + LG FG + G+S+PTQ I DL+LS+SE+S FGS+ +GAM+GA+ASG +A+
Sbjct: 67 TLIVALGPIQFGFTSGFSSPTQDAIIRDLKLSISEFSAFGSLSNVGAMVGAIASGQMAEY 126
Query: 88 SGRKGAMRTSALVCIVGWLAIFFAQ 112
GRKG++ +A+ I+GWLAI FA+
Sbjct: 127 IGRKGSLIIAAVPNIIGWLAISFAK 151
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,636,499
Number of extensions: 122418
Number of successful extensions: 560
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 560
Number of HSP's successfully gapped: 6
Length of query: 121
Length of database: 17,035,801
Length adjustment: 87
Effective length of query: 34
Effective length of database: 12,493,183
Effective search space: 424768222
Effective search space used: 424768222
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)