Os05g0567800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Integral membrane protein.
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Os05g0567800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Integral membrane protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.78 | 0.311 | 9.37 | -1.01 | 0.389 | 0.829 | 0.68 | 0.0338 | 0.632 | 22.5 | 20.65 | 125 | -- | -- |
| 43.78 | 0.308 | 9.37 | -1.01 | 0.389 | 0.83 | 0.708 | -- | 0.632 | 22.5 | 20.66 | 124 | -- | -- |
| 44.43 | 0.31 | 9.37 | -1.03 | 0.408 | 0.805 | -- | 0.553 | 0.622 | 22.6 | 20.99 | 124 | -- | -- |
| 45.82 | 0.315 | 9.37 | -1.03 | 0.393 | 0.832 | -- | -- | 0.63 | 22.5 | 21.32 | 124 | -- | -- |
| 47.75 | 0.322 | 9.36 | -1.02 | -- | 1.04 | -- | 0.467 | 0.647 | -- | 17.79 | 90 | -- | -- |
| 54.67 | 0.347 | 9.39 | -1.05 | 1.15 | -- | 0.726 | -- | 0.585 | 0.185 | -- | -- | -- | -- |
| 56.95 | 0.353 | 9.39 | -1.08 | 1.14 | -- | -- | -- | 0.581 | 0.225 | -- | -- | -- | -- |
| 48.93 | 0.326 | 9.35 | -1.04 | -- | 1.05 | -- | -- | 0.651 | -- | 18.07 | 87 | -- | -- |
| 73.72 | 0.4 | 9.34 | -- | 0.33 | 0.921 | -- | -- | 0.754 | 21.7 | 21.86 | 125 | -- | -- |
| 139.11 | 0.551 | 9.37 | -1.04 | -- | -- | -- | -- | 0.599 | -- | -- | -- | -- | -- |
| 87.75 | 0.438 | 9.36 | -- | 1.13 | -- | -- | -- | 0.702 | 0.174 | -- | -- | -- | -- |
| 76.99 | 0.409 | 9.33 | -- | -- | 1.1 | -- | -- | 0.775 | -- | 21.85 | 93 | -- | -- |
| 167.84 | 0.605 | 9.34 | -- | -- | -- | -- | -- | 0.714 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.16 | humidity | 60.0 | 10 | > th | dose dependent | sin | 22 | NA |
| 7 | 42.73 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 8 | 42.73 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 9 |
| 13 | 42.78 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 18 | 42.92 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 20 | 42.92 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 10 |
| 22 | 42.96 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 28 | 43.00 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 31 | 43.06 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 35 | 43.12 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 5 |
| 41 | 43.18 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 7 | 11 |
| 48 | 43.28 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 24 | 18 |
| 56 | 43.32 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 65 | 43.36 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 67 | 43.38 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 71 | 43.43 | humidity | 90.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 73 | 43.44 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 3 | 15 |
| 83 | 43.48 | humidity | 90.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 110 | 43.58 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 119 | 43.61 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 124 | 43.63 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 128 | 43.64 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 135 | 43.66 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 8 | 6 |
| 140 | 43.67 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 186 | 43.72 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 7 |
| 250 | 43.80 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 347 | 43.93 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 348 | 43.93 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 388 | 43.97 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 9 | 9 |
| 409 | 43.99 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 410 | 44.00 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 412 | 44.00 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 461 | 44.05 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 7 | 22 |
| 470 | 44.07 | humidity | 70.0 | 270 | > th | dose independent | rect. | 2 | 16 |
| 477 | 44.08 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 490 | 44.08 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 501 | 44.10 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 503 | 44.10 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 512 | 44.11 | temperature | 15.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 513 | 44.11 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 23 | NA |
| 523 | 44.12 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 537 | 44.13 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 632 | 44.21 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 653 | 44.23 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 680 | 44.24 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 7 | 19 |
| 721 | 44.28 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 722 | 44.28 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 726 | 44.28 | radiation | 20.0 | 90 | < th | dose dependent | sin | 23 | NA |
| 752 | 44.29 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 799 | 44.33 | radiation | 20.0 | 90 | < th | dose dependent | no | NA | NA |
| 817 | 44.34 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 9 |
| 859 | 44.37 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 9 |
| 862 | 44.37 | humidity | 80.0 | 10 | < th | dose dependent | no | NA | NA |
| 880 | 44.37 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 881 | 44.37 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 906 | 44.38 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 5 | 23 |