Os05g0567700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Integral membrane protein.
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Os05g0567700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Integral membrane protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.12 | 0.37 | 9.59 | -3 | 1.94 | -0.919 | 0.385 | -2.82 | 0.395 | 0.585 | 18.86 | 12432 | -- | -- |
| 64.33 | 0.374 | 9.41 | -2.32 | 1.92 | -0.827 | 0.208 | -- | 0.737 | 0.71 | 25.79 | 13043 | -- | -- |
| 61.12 | 0.364 | 9.62 | -2.71 | 1.93 | -1.35 | -- | -3.58 | 0.48 | 0.592 | 11.13 | 16632 | -- | -- |
| 61.52 | 0.365 | 9.41 | -2.29 | 1.93 | -0.905 | -- | -- | 0.782 | 0.598 | 27.52 | 16629 | -- | -- |
| 203.36 | 0.668 | 9.44 | -2.49 | -- | -2.65 | -- | -2 | 0.612 | -- | 11.36 | 16111 | -- | -- |
| 86.24 | 0.435 | 9.52 | -2.76 | 1.89 | -- | 0.28 | -- | 0.298 | 0.58 | -- | -- | -- | -- |
| 86.58 | 0.436 | 9.52 | -2.77 | 1.89 | -- | -- | -- | 0.297 | 0.584 | -- | -- | -- | -- |
| 206.74 | 0.673 | 9.41 | -2.21 | -- | -2.69 | -- | -- | 0.688 | -- | 11.36 | 16111 | -- | -- |
| 90.26 | 0.442 | 9.29 | -- | 1.94 | -2.14 | -- | -- | 1.33 | 0.593 | 17.3 | 47520 | -- | -- |
| 311.29 | 0.824 | 9.49 | -2.7 | -- | -- | -- | -- | 0.33 | -- | -- | -- | -- | -- |
| 288.32 | 0.794 | 9.45 | -- | 1.85 | -- | -- | -- | 0.605 | 0.512 | -- | -- | -- | -- |
| 326.39 | 0.841 | 9.27 | -- | -- | -2.04 | -- | -- | 1.3 | -- | 16.5 | 47520 | -- | -- |
| 503.61 | 1.05 | 9.42 | -- | -- | -- | -- | -- | 0.629 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.89 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 2 | 60.96 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 3 | 60.97 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 4 | 60.99 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 11 | 61.33 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 13 | 61.40 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 23 | 61.55 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 30 | 61.72 | temperature | 10 | 14400 | > th | dose dependent | rect. | 12 | 17 |
| 38 | 61.75 | temperature | 10 | 14400 | > th | dose dependent | rect. | 18 | 20 |
| 43 | 61.76 | temperature | 30 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 54 | 61.77 | temperature | 10 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 85 | 61.80 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 86 | 61.80 | temperature | 10 | 14400 | > th | dose dependent | sin | 15 | NA |
| 87 | 61.80 | temperature | 10 | 14400 | > th | dose dependent | no | NA | NA |
| 102 | 61.80 | temperature | 10 | 14400 | > th | dose dependent | rect. | 24 | 23 |
| 104 | 61.81 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 108 | 61.81 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 117 | 61.81 | temperature | 10 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 162 | 61.84 | temperature | 10 | 14400 | > th | dose dependent | rect. | 24 | 15 |
| 242 | 61.87 | temperature | 10 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 247 | 61.87 | temperature | 30 | 14400 | < th | dose dependent | rect. | 18 | 17 |
| 299 | 61.89 | temperature | 10 | 14400 | > th | dose dependent | sin | 5 | NA |
| 301 | 61.89 | temperature | 30 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 333 | 61.90 | temperature | 30 | 14400 | < th | dose dependent | rect. | 19 | 6 |
| 493 | 61.96 | temperature | 30 | 14400 | < th | dose dependent | sin | 14 | NA |
| 527 | 61.96 | temperature | 30 | 14400 | < th | dose dependent | rect. | 13 | 20 |
| 539 | 61.97 | temperature | 10 | 14400 | > th | dose dependent | rect. | 3 | 8 |
| 585 | 61.99 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 713 | 62.04 | temperature | 30 | 14400 | < th | dose dependent | sin | 9 | NA |
| 769 | 62.06 | temperature | 30 | 14400 | < th | dose dependent | rect. | 24 | 11 |
| 812 | 62.08 | temperature | 30 | 14400 | < th | dose dependent | rect. | 3 | 7 |
| 862 | 62.10 | temperature | 30 | 14400 | < th | dose dependent | no | NA | NA |
| 893 | 62.11 | temperature | 30 | 14400 | < th | dose dependent | rect. | 24 | 23 |
| 912 | 62.12 | temperature | 30 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 929 | 62.13 | temperature | 30 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 956 | 62.15 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |