Os03g0363500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Sugar transporter-like protein.
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Os03g0363500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Sugar transporter-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.46 | 0.324 | 11.2 | -0.776 | 0.577 | -0.413 | 0.308 | 8.11 | -0.588 | 4.98 | 30.05 | 1309 | -- | -- |
| 51.65 | 0.335 | 11.3 | -2.08 | 0.604 | 0.464 | 0.498 | -- | -0.583 | 4.42 | 30.7 | 1292 | -- | -- |
| 47.69 | 0.322 | 11.2 | -0.767 | 0.576 | -0.42 | -- | 8.21 | -0.581 | 5.04 | 29.98 | 1287 | -- | -- |
| 49.74 | 0.328 | 11.3 | -2.11 | 0.579 | 0.563 | -- | -- | -0.73 | 4.9 | 24.48 | 1334 | -- | -- |
| 65.07 | 0.376 | 11.2 | -0.801 | -- | -0.352 | -- | 8.04 | -0.565 | -- | 29.91 | 1287 | -- | -- |
| 63.04 | 0.372 | 11.3 | -2.06 | 0.639 | -- | 0.474 | -- | -0.692 | 4.72 | -- | -- | -- | -- |
| 63.63 | 0.374 | 11.3 | -2.06 | 0.642 | -- | -- | -- | -0.695 | 4.73 | -- | -- | -- | -- |
| 65.19 | 0.376 | 11.4 | -2.29 | -- | 0.756 | -- | -- | -0.791 | -- | 24.1 | 1263 | -- | -- |
| 173.2 | 0.613 | 11.3 | -- | 0.544 | 0.227 | -- | -- | -0.397 | 5.08 | 30.23 | 1212 | -- | -- |
| 85.51 | 0.432 | 11.3 | -2.03 | -- | -- | -- | -- | -0.678 | -- | -- | -- | -- | -- |
| 175.29 | 0.619 | 11.3 | -- | 0.605 | -- | -- | -- | -0.465 | 4.83 | -- | -- | -- | -- |
| 187.44 | 0.638 | 11.3 | -- | -- | -0.674 | -- | -- | -0.377 | -- | 14.2 | 220 | -- | -- |
| 194.64 | 0.651 | 11.3 | -- | -- | -- | -- | -- | -0.452 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.53 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 3 | 47.69 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 44 | 47.77 | temperature | 30 | 1440 | > th | dose dependent | sin | 22 | NA |
| 67 | 47.78 | temperature | 30 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 101 | 47.80 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 237 | 47.86 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 260 | 47.93 | temperature | 20 | 720 | > th | dose dependent | sin | 15 | NA |
| 264 | 47.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 267 | 47.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 283 | 47.98 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 287 | 48.00 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 303 | 48.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 312 | 48.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 318 | 48.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 325 | 48.11 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 14 |
| 327 | 48.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 18 |
| 340 | 48.17 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 369 | 48.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 372 | 48.22 | temperature | 30 | 1440 | < th | dose independent | sin | 9 | NA |
| 375 | 48.22 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 380 | 48.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 10 |
| 381 | 48.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 12 |
| 382 | 48.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 404 | 48.26 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 7 |
| 411 | 48.28 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 413 | 48.28 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 423 | 48.29 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 442 | 48.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 478 | 48.34 | temperature | 30 | 1440 | > th | dose independent | sin | 9 | NA |
| 499 | 48.36 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 519 | 48.37 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 9 |
| 577 | 48.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 590 | 48.50 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 641 | 48.54 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 677 | 48.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 15 |
| 706 | 48.60 | temperature | 20 | 1440 | > th | dose dependent | sin | 21 | NA |
| 766 | 48.64 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 801 | 48.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 815 | 48.67 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 862 | 48.69 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 884 | 48.70 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 3 |