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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0363600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Sugar transporter-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.43 (0.0278) R2 : 0.722
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.42 (0.0995) R2dE : 0.722 R2E : 0.722
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.025 (0.0585) R2dN8 : 0.000143 R2N8 : 7.58e-05
σ : 0.522
deviance : 125.65
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 17.05
memory length : 329
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16
open length of G : 20.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
120.47 0.516 3.44 -0.201 0.068 -2.75 -1.11 1.35 -0.0455 9.37 16.9 278 16.8 19.3
123.39 0.517 3.45 -0.204 0.136 -2.79 -1.06 -- -0.0421 11.3 16.94 269 16.9 19.5
123.75 0.518 3.43 -0.189 0.158 -2.78 -- 1.02 -0.0316 14.3 17.1 279 16.7 19.6
125.45 0.522 3.47 -0.239 0.2 -2.93 -- -- -0.0438 14.9 16.9 299 16.4 20.1
125 0.521 3.44 -0.229 -- -2.79 -- 1.13 -0.0304 -- 17.07 273 16.8 19.4
267.03 0.766 3.47 -0.469 1.83 -- -0.555 -- 0.0109 17 -- -- -- --
267.78 0.766 3.47 -0.471 1.83 -- -- -- 0.00807 17.1 -- -- -- --
125.96 0.523 3.47 -0.179 -- -3.3 -- -- -0.0587 -- 17 318 16.2 20.1
125 0.521 3.44 -- 0.157 -3.21 -- -- 0.0163 14.2 17.08 305 16.2 20.3
443.89 0.984 3.45 -0.536 -- -- -- -- -0.0385 -- -- -- -- --
273.62 0.774 3.46 -- 1.84 -- -- -- 0.0605 17.1 -- -- -- --
125.65 0.522 3.43 -- -- -3.42 -- -- 0.025 -- 17.05 329 16 20.3
451.49 0.992 3.43 -- -- -- -- -- 0.021 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 144.56 temperature 15.0 270 > th dose independent rect. 17 19
2 145.54 temperature 15.0 270 > th dose independent rect. 16 21
5 148.85 temperature 15.0 270 > th dose independent rect. 7 15
6 148.90 temperature 20.0 270 > th dose independent rect. 6 6
14 155.00 temperature 20.0 270 > th dose independent rect. 8 3
15 155.39 wind 7.0 90 < th dose independent rect. 18 19
19 156.75 wind 7.0 10 < th dose independent rect. 18 20
25 158.73 temperature 10.0 270 > th dose dependent rect. 5 7
26 158.90 atmosphere 1015.0 1440 < th dose independent rect. 15 4
29 159.40 temperature 20.0 10 > th dose independent rect. 8 6
44 163.06 humidity 90.0 90 < th dose independent rect. 8 6
53 164.55 humidity 90.0 10 < th dose independent rect. 8 6
58 165.04 temperature 15.0 10 > th dose dependent rect. 8 6
88 168.22 temperature 10.0 90 > th dose dependent rect. 18 20
90 168.40 wind 9.0 270 < th dose independent rect. 16 21
96 169.08 temperature 10.0 270 > th dose dependent rect. 18 18
97 169.12 wind 7.0 10 < th dose independent rect. 8 6
116 170.80 temperature 15.0 270 > th dose dependent rect. 8 3
121 170.95 wind 9.0 270 < th dose independent rect. 13 3
127 171.55 temperature 10.0 270 > th dose independent rect. 13 3
129 171.55 atmosphere 1010.0 270 < th dose independent rect. 13 3
133 171.59 precipitation 0.1 270 < th dose independent rect. 16 21
134 171.59 precipitation 0.1 270 < th dose dependent rect. 16 21
142 172.10 precipitation 0.1 270 < th dose independent rect. 13 3
144 172.10 precipitation 0.1 270 < th dose dependent rect. 13 3
147 172.23 radiation 1.0 270 > th dose independent rect. 17 20
149 172.36 wind 9.0 270 < th dose independent rect. 12 5
156 172.68 temperature 10.0 270 > th dose independent rect. 12 5
158 172.68 atmosphere 1015.0 270 < th dose independent rect. 12 5
162 172.91 atmosphere 995.0 270 > th dose independent rect. 17 19
164 173.10 precipitation 0.1 270 < th dose independent rect. 17 19
165 173.10 precipitation 0.1 270 < th dose dependent rect. 17 19
170 173.42 atmosphere 995.0 270 > th dose independent rect. 16 21
175 173.68 precipitation 0.1 270 < th dose independent rect. 12 5
176 173.68 precipitation 0.1 270 < th dose dependent rect. 12 5
181 174.14 wind 1.0 270 > th dose independent rect. 13 3
189 174.43 wind 1.0 270 > th dose independent rect. 12 5
192 174.70 humidity 50.0 270 > th dose independent rect. 17 19
220 176.22 atmosphere 995.0 270 > th dose independent rect. 13 3
221 176.22 wind 7.0 90 < th dose independent rect. 7 7
235 176.75 temperature 10.0 10 > th dose dependent rect. 19 19
241 177.03 radiation 1.0 270 > th dose independent rect. 5 7
255 177.14 humidity 50.0 270 > th dose independent rect. 13 3
279 177.54 radiation 1.0 270 > th dose independent rect. 8 3
316 178.72 temperature 10.0 43200 > th dose independent rect. 15 5
322 178.90 radiation 40.0 90 < th dose independent rect. 13 5
323 178.92 atmosphere 995.0 270 > th dose independent rect. 12 5
396 181.22 radiation 1.0 270 > th dose independent rect. 13 3
456 182.56 humidity 90.0 270 < th dose independent rect. 13 3
458 182.77 temperature 30.0 10 < th dose dependent rect. 2 16
479 183.23 humidity 90.0 270 < th dose independent rect. 12 5
483 183.38 atmosphere 1010.0 90 < th dose independent rect. 18 19
524 184.27 humidity 50.0 270 > th dose independent rect. 12 6
611 185.77 wind 9.0 270 < th dose dependent rect. 7 5
632 186.22 temperature 10.0 1440 > th dose independent rect. 15 4
636 186.22 temperature 10.0 1440 > th dose independent rect. 19 20
639 186.25 wind 9.0 270 < th dose independent rect. 7 15
649 186.36 precipitation 0.1 270 < th dose independent rect. 5 7
650 186.36 precipitation 0.1 270 < th dose dependent rect. 5 7
668 186.71 precipitation 0.1 270 < th dose independent rect. 7 15
670 186.71 precipitation 0.1 270 < th dose dependent rect. 7 15
687 187.04 wind 9.0 270 < th dose dependent rect. 13 3
702 187.17 wind 9.0 270 < th dose independent rect. 12 18
703 187.18 radiation 40.0 90 < th dose dependent rect. 13 5
707 187.30 temperature 30.0 10 < th dose dependent rect. 24 18
714 187.39 atmosphere 995.0 270 > th dose independent rect. 5 7
715 187.39 atmosphere 1015.0 270 < th dose independent rect. 5 7
716 187.39 temperature 10.0 270 > th dose independent rect. 12 17
738 187.52 wind 7.0 270 < th dose independent rect. 22 9
744 187.57 temperature 10.0 270 > th dose independent rect. 22 9
745 187.57 temperature 30.0 270 < th dose independent rect. 22 9
746 187.57 humidity 50.0 270 > th dose independent rect. 22 9
748 187.57 atmosphere 995.0 270 > th dose independent rect. 22 9
749 187.57 radiation 40.0 270 < th dose independent rect. 22 9
766 187.79 radiation 40.0 10 < th dose dependent rect. 12 6
769 187.83 temperature 15.0 270 > th dose independent rect. 17 8
778 187.95 atmosphere 1010.0 270 < th dose independent rect. 8 3
786 188.05 atmosphere 1015.0 1440 < th dose independent rect. 2 7
787 188.05 precipitation 0.1 270 < th dose independent rect. 22 9
788 188.05 precipitation 0.1 270 < th dose dependent rect. 22 9
790 188.07 radiation 20.0 270 < th dose independent rect. 16 9
801 188.27 radiation 40.0 270 < th dose dependent rect. 16 9
807 188.37 wind 1.0 270 > th dose independent rect. 6 6
816 188.47 temperature 10.0 270 > th dose independent rect. 1 15
817 188.47 atmosphere 1015.0 270 < th dose independent rect. 1 15
818 188.47 wind 9.0 270 < th dose dependent rect. 14 1
827 188.59 humidity 50.0 270 > th dose independent rect. 6 6
829 188.67 humidity 90.0 10 < th dose dependent rect. 8 6
832 188.73 humidity 50.0 14400 > th dose independent rect. 19 8
834 188.74 precipitation 0.1 270 < th dose independent rect. 12 18
835 188.74 precipitation 0.1 270 < th dose dependent rect. 12 18
848 188.89 wind 9.0 270 < th dose independent rect. 16 9
933 190.02 atmosphere 995.0 270 > th dose dependent rect. 13 3
942 190.13 temperature 30.0 270 < th dose independent rect. 18 17
955 190.26 atmosphere 1010.0 10 < th dose independent rect. 8 6
983 190.60 atmosphere 995.0 270 > th dose independent rect. 16 9
992 190.69 radiation 1.0 270 > th dose independent rect. 12 17
998 190.73 precipitation 0.1 270 < th dose independent rect. 16 9