Os05g0579000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Integral membrane protein.
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Os05g0579000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Integral membrane protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.54 | 0.223 | 13.4 | -1.27 | 0.878 | 0.715 | 0.0817 | -2.16 | -0.239 | 8.01 | 22.04 | 1221 | -- | -- |
| 25.76 | 0.236 | 13.3 | -0.671 | 0.86 | 0.625 | 0.225 | -- | -0.0706 | 7.97 | 17.65 | 1149 | -- | -- |
| 22.5 | 0.221 | 13.4 | -1.27 | 0.907 | 0.742 | -- | -2.23 | -0.239 | 8.05 | 22.15 | 1152 | -- | -- |
| 25.45 | 0.235 | 13.3 | -0.699 | 0.964 | 0.835 | -- | -- | -0.0845 | 8.02 | 14.6 | 955 | -- | -- |
| 62.47 | 0.368 | 13.4 | -1.18 | -- | 0.661 | -- | -1.76 | -0.205 | -- | 21.8 | 1382 | -- | -- |
| 35.22 | 0.278 | 13.3 | -0.469 | 0.859 | -- | 0.167 | -- | 0.0552 | 7.59 | -- | -- | -- | -- |
| 35.3 | 0.278 | 13.3 | -0.465 | 0.859 | -- | -- | -- | 0.0549 | 7.58 | -- | -- | -- | -- |
| 64.94 | 0.375 | 13.4 | -0.842 | -- | 0.765 | -- | -- | -0.136 | -- | 10.89 | 7188 | -- | -- |
| 36.4 | 0.283 | 13.3 | -- | 0.906 | 0.651 | -- | -- | 0.0283 | 6.85 | 14.6 | 955 | -- | -- |
| 74.93 | 0.404 | 13.3 | -0.452 | -- | -- | -- | -- | 0.068 | -- | -- | -- | -- | -- |
| 40.99 | 0.299 | 13.3 | -- | 0.856 | -- | -- | -- | 0.107 | 7.62 | -- | -- | -- | -- |
| 78.18 | 0.413 | 13.3 | -- | -- | 0.371 | -- | -- | 0.0757 | -- | 14.6 | 955 | -- | -- |
| 80.33 | 0.418 | 13.3 | -- | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.49 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 2 | 22.60 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 5 | 22.75 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 6 | 22.76 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 13 | 22.85 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 19 | 22.94 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 21 | 22.96 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 22 | 22.96 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 26 | 22.98 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 28 | 23.00 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 31 | 23.01 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 34 | 23.03 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 38 | 23.07 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 12 |
| 42 | 23.07 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 50 | 23.08 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 57 | 23.09 | wind | 5 | 43200 | > th | dose dependent | sin | 18 | NA |
| 63 | 23.10 | wind | 5 | 43200 | > th | dose independent | sin | 18 | NA |
| 88 | 23.16 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 94 | 23.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 13 |
| 95 | 23.20 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 97 | 23.20 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 112 | 23.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 11 |
| 115 | 23.22 | wind | 5 | 43200 | < th | dose independent | sin | 19 | NA |
| 129 | 23.24 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 151 | 23.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 162 | 23.27 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 168 | 23.28 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 185 | 23.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 203 | 23.31 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 231 | 23.34 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 241 | 23.35 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 261 | 23.37 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 311 | 23.41 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 345 | 23.44 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 358 | 23.45 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 9 |
| 411 | 23.50 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 421 | 23.51 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 449 | 23.53 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 483 | 23.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 20 |
| 522 | 23.57 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 523 | 23.57 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 594 | 23.61 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 609 | 23.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 636 | 23.63 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 714 | 23.67 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 725 | 23.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 737 | 23.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 741 | 23.69 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 788 | 23.71 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 22 |
| 905 | 23.77 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 14 |
| 986 | 23.82 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |