BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0521500 Os11g0521500|AK120212
(148 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0521500 Similar to Acyl carrier protein, chloroplast p... 252 8e-68
Os12g0534200 Similar to Acyl carrier protein I, chloroplast... 116 8e-27
Os08g0549300 Similar to Acyl carrier protein III, chloropla... 113 6e-26
Os03g0856300 Similar to Acyl carrier protein III, chloropla... 97 3e-21
Os09g0539800 Similar to Acyl carrier protein III, chloropla... 83 6e-17
Os03g0352800 Similar to Acyl carrier protein 1 (EC 1.6.5.3)... 65 2e-11
>Os11g0521500 Similar to Acyl carrier protein, chloroplast precursor (ACP)
(ACP05) (Clone 29C08)
Length = 148
Score = 252 bits (643), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 14 GCPPAAALGSWKGSRISSRNLVSMKTMTARRGLVSLRSPRFRVFCAAKAETVGKVMQIVK 73
GCPPAAALGSWKGSRISSRNLVSMKTMTARRGLVSLRSPRFRVFCAAKAETVGKVMQIVK
Sbjct: 14 GCPPAAALGSWKGSRISSRNLVSMKTMTARRGLVSLRSPRFRVFCAAKAETVGKVMQIVK 73
Query: 74 QQLALGEEAKLAPESQFTELGADSLDTVEIVMALEEEFGITVEEDNAQSITTIQDAADLI 133
QQLALGEEAKLAPESQFTELGADSLDTVEIVMALEEEFGITVEEDNAQSITTIQDAADLI
Sbjct: 74 QQLALGEEAKLAPESQFTELGADSLDTVEIVMALEEEFGITVEEDNAQSITTIQDAADLI 133
Query: 134 DKLV 137
DKLV
Sbjct: 134 DKLV 137
>Os12g0534200 Similar to Acyl carrier protein I, chloroplast precursor (ACP I)
Length = 144
Score = 116 bits (290), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 81/113 (71%), Gaps = 6/113 (5%)
Query: 29 ISSRNLVSMKTMTARRGLVSLRSP----RFRVFCAAKAETVGKVMQIVKQQLALGEEAKL 84
IS R+ VS + R +S+RS RF++ C+AK ETV KV IVK QLAL E +
Sbjct: 29 ISRRSSVSFNSQ--RISFMSIRSRPSQLRFKICCSAKKETVDKVCNIVKTQLALPEGTAV 86
Query: 85 APESQFTELGADSLDTVEIVMALEEEFGITVEEDNAQSITTIQDAADLIDKLV 137
ES+F+ELGADSLDTVEIVM LEEEF ITV+E +AQ I T+QDAA+LI+KLV
Sbjct: 87 TGESKFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDAANLIEKLV 139
>Os08g0549300 Similar to Acyl carrier protein III, chloroplast precursor (ACP
III)
Length = 138
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 79/106 (74%), Gaps = 4/106 (3%)
Query: 36 SMKTMTARRGLVSLR-SP---RFRVFCAAKAETVGKVMQIVKQQLALGEEAKLAPESQFT 91
S+ +AR+G LR P RF V CAAK ETV KV IVK+QLA+ E +++ S+F+
Sbjct: 23 SISFTSARKGNAFLRLQPVPMRFAVCCAAKKETVEKVCDIVKKQLAVPEGTEVSGASKFS 82
Query: 92 ELGADSLDTVEIVMALEEEFGITVEEDNAQSITTIQDAADLIDKLV 137
+LGADSLDTVEIVM LEEEF I+VEE +AQSI T++DAA LIDKLV
Sbjct: 83 DLGADSLDTVEIVMGLEEEFHISVEESSAQSIATVEDAAALIDKLV 128
>Os03g0856300 Similar to Acyl carrier protein III, chloroplast precursor (ACP
III)
Length = 140
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Query: 53 RFRVF-CAAKAETVGKVMQIVKQQLALGEEAKLAPESQFTELGADSLDTVEIVMALEEEF 111
RF+ C+AK +T+ KV +IVK QLA+ E ++ E++F +LGADSLDTVEIVM LEE F
Sbjct: 50 RFQALSCSAKQDTIDKVCEIVKNQLAVDEGTAVSGETKFVDLGADSLDTVEIVMGLEEAF 109
Query: 112 GITVEEDNAQSITTIQDAADLIDKLV 137
ITV+E +AQ I T++DAA LIDKLV
Sbjct: 110 QITVDESSAQVIQTVEDAAVLIDKLV 135
>Os09g0539800 Similar to Acyl carrier protein III, chloroplast precursor (ACP
III)
Length = 72
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 54/68 (79%)
Query: 70 QIVKQQLALGEEAKLAPESQFTELGADSLDTVEIVMALEEEFGITVEEDNAQSITTIQDA 129
IVK+QL L E + S+FT+LGADSLDTVEIVM LEE F I+V+E +AQSI T++DA
Sbjct: 1 DIVKKQLVLPEGTDVTGASKFTDLGADSLDTVEIVMGLEEAFKISVDESSAQSIATVEDA 60
Query: 130 ADLIDKLV 137
A+LIDK+V
Sbjct: 61 AELIDKIV 68
>Os03g0352800 Similar to Acyl carrier protein 1 (EC 1.6.5.3) (EC 1.6.99.3)
Length = 135
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 61 KAETVGKVMQIVKQQLALGEEAKLAPESQF-TELGADSLDTVEIVMALEEEFGITVEEDN 119
KAE +++++V+ + + AK+ P++ F +LG DSLD VE+VMALEEEFG + ++
Sbjct: 55 KAEVTERIVKVVRNFQKIDDPAKVTPDAHFKNDLGLDSLDAVEVVMALEEEFGFEIPDNE 114
Query: 120 AQSITTIQDAADLI 133
A I +I+ A D I
Sbjct: 115 ADKIDSIKVAVDFI 128
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.129 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,477,861
Number of extensions: 108785
Number of successful extensions: 313
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 6
Length of query: 148
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 56
Effective length of database: 12,232,113
Effective search space: 684998328
Effective search space used: 684998328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 151 (62.8 bits)