Os12g0534200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Acyl carrier protein I, chloroplast precursor (ACP I).
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Os12g0534200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Acyl carrier protein I, chloroplast precursor (ACP I).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.85 | 0.409 | 13.5 | -0.937 | 1.49 | -0.684 | 0.0376 | -0.525 | -0.733 | 20.4 | 28.3 | 1577 | -- | -- |
| 76.31 | 0.407 | 13.5 | -1.01 | 1.47 | -0.738 | 0.0852 | -- | -0.732 | 20.5 | 28.4 | 1621 | -- | -- |
| 75.84 | 0.406 | 13.5 | -0.934 | 1.48 | -0.691 | -- | -0.544 | -0.731 | 20.5 | 28.3 | 1601 | -- | -- |
| 76.09 | 0.406 | 13.5 | -1.09 | 1.48 | -0.73 | -- | -- | -0.759 | 20.5 | 28.4 | 1588 | -- | -- |
| 145.67 | 0.562 | 13.5 | -0.732 | -- | -0.955 | -- | 0.132 | -0.605 | -- | 26.3 | 632 | -- | -- |
| 100.78 | 0.471 | 13.4 | -0.827 | 1.52 | -- | 0.0474 | -- | -0.622 | 20.4 | -- | -- | -- | -- |
| 100.79 | 0.47 | 13.4 | -0.829 | 1.52 | -- | -- | -- | -0.622 | 20.4 | -- | -- | -- | -- |
| 116.72 | 0.503 | 13.5 | -1.28 | -- | -1.5 | -- | -- | -1.08 | -- | 25.8 | 639 | -- | -- |
| 105.09 | 0.477 | 13.4 | -- | 1.52 | -0.553 | -- | -- | -0.586 | 20.4 | 28.7 | 1601 | -- | -- |
| 229.08 | 0.707 | 13.4 | -0.836 | -- | -- | -- | -- | -0.637 | -- | -- | -- | -- | -- |
| 118.88 | 0.51 | 13.4 | -- | 1.52 | -- | -- | -- | -0.529 | 20.4 | -- | -- | -- | -- |
| 157.97 | 0.585 | 13.5 | -- | -- | -1.31 | -- | -- | -0.882 | -- | 25.97 | 610 | -- | -- |
| 247.52 | 0.734 | 13.4 | -- | -- | -- | -- | -- | -0.544 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 2 | 73.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 16 | 74.55 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 24 | 74.65 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 25 | 74.66 | temperature | 15 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 26 | 74.66 | temperature | 30 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 32 | 74.71 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 34 | 74.72 | temperature | 30 | 14400 | < th | dose dependent | rect. | 19 | 3 |
| 40 | 74.77 | temperature | 30 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 98 | 75.01 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 137 | 75.14 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 144 | 75.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 155 | 75.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 156 | 75.20 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 162 | 75.21 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 205 | 75.30 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 222 | 75.33 | temperature | 20 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 238 | 75.36 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 239 | 75.36 | temperature | 20 | 14400 | > th | dose dependent | sin | 10 | NA |
| 254 | 75.37 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 297 | 75.43 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 349 | 75.48 | temperature | 20 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 355 | 75.49 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 377 | 75.51 | temperature | 30 | 14400 | < th | dose dependent | sin | 15 | NA |
| 397 | 75.52 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 400 | 75.52 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 18 |
| 425 | 75.54 | temperature | 25 | 14400 | < th | dose dependent | rect. | 12 | 17 |
| 428 | 75.55 | temperature | 10 | 14400 | > th | dose dependent | sin | 14 | NA |
| 435 | 75.55 | temperature | 25 | 14400 | < th | dose dependent | rect. | 13 | 14 |
| 490 | 75.58 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 493 | 75.59 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 659 | 75.68 | temperature | 20 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 742 | 75.72 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 18 |
| 763 | 75.73 | temperature | 20 | 14400 | > th | dose dependent | no | NA | NA |
| 779 | 75.73 | temperature | 20 | 14400 | > th | dose dependent | rect. | 1 | 22 |
| 818 | 75.74 | temperature | 20 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 848 | 75.76 | temperature | 25 | 14400 | < th | dose dependent | no | NA | NA |
| 883 | 75.76 | temperature | 25 | 14400 | < th | dose dependent | rect. | 24 | 23 |
| 923 | 75.77 | temperature | 25 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 986 | 75.79 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 23 |