BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0534200 Os12g0534200|AK120370
(144 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0534200 Similar to Acyl carrier protein I, chloroplast... 248 1e-66
Os08g0549300 Similar to Acyl carrier protein III, chloropla... 154 1e-38
Os03g0856300 Similar to Acyl carrier protein III, chloropla... 146 6e-36
Os11g0521500 Similar to Acyl carrier protein, chloroplast p... 117 4e-27
Os09g0539800 Similar to Acyl carrier protein III, chloropla... 105 1e-23
>Os12g0534200 Similar to Acyl carrier protein I, chloroplast precursor (ACP I)
Length = 144
Score = 248 bits (632), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/144 (86%), Positives = 125/144 (86%)
Query: 1 MAHXXXXXXXXXXXXXXXXXXXGQVTNVISRRSSVSFNSQRISFMSIRSRPSQLRFKICC 60
MAH GQVTNVISRRSSVSFNSQRISFMSIRSRPSQLRFKICC
Sbjct: 1 MAHSLAAAASSFSPPAARRRLPGQVTNVISRRSSVSFNSQRISFMSIRSRPSQLRFKICC 60
Query: 61 SAKKETVDKVCNIVKTQLALPEGTAVTGESKFSELGADSLDTVEIVMGLEEEFNITVDET 120
SAKKETVDKVCNIVKTQLALPEGTAVTGESKFSELGADSLDTVEIVMGLEEEFNITVDET
Sbjct: 61 SAKKETVDKVCNIVKTQLALPEGTAVTGESKFSELGADSLDTVEIVMGLEEEFNITVDET 120
Query: 121 SAQDIATVQDAANLIEKLVLEKAA 144
SAQDIATVQDAANLIEKLVLEKAA
Sbjct: 121 SAQDIATVQDAANLIEKLVLEKAA 144
>Os08g0549300 Similar to Acyl carrier protein III, chloroplast precursor (ACP
III)
Length = 138
Score = 154 bits (390), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 96/114 (84%)
Query: 31 RRSSVSFNSQRISFMSIRSRPSQLRFKICCSAKKETVDKVCNIVKTQLALPEGTAVTGES 90
+ +S+SF S R +R +P +RF +CC+AKKETV+KVC+IVK QLA+PEGT V+G S
Sbjct: 20 KTNSISFTSARKGNAFLRLQPVPMRFAVCCAAKKETVEKVCDIVKKQLAVPEGTEVSGAS 79
Query: 91 KFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDAANLIEKLVLEKAA 144
KFS+LGADSLDTVEIVMGLEEEF+I+V+E+SAQ IATV+DAA LI+KLV +K+A
Sbjct: 80 KFSDLGADSLDTVEIVMGLEEEFHISVEESSAQSIATVEDAAALIDKLVEQKSA 133
>Os03g0856300 Similar to Acyl carrier protein III, chloroplast precursor (ACP
III)
Length = 140
Score = 146 bits (368), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 77/113 (68%), Positives = 91/113 (80%), Gaps = 1/113 (0%)
Query: 33 SSVSFNSQRISFMSIRSRPSQLRFK-ICCSAKKETVDKVCNIVKTQLALPEGTAVTGESK 91
+S SF+ Q SF SIR RP RF+ + CSAK++T+DKVC IVK QLA+ EGTAV+GE+K
Sbjct: 28 TSASFSRQTASFPSIRLRPVPSRFQALSCSAKQDTIDKVCEIVKNQLAVDEGTAVSGETK 87
Query: 92 FSELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDAANLIEKLVLEKAA 144
F +LGADSLDTVEIVMGLEE F ITVDE+SAQ I TV+DAA LI+KLV EK A
Sbjct: 88 FVDLGADSLDTVEIVMGLEEAFQITVDESSAQVIQTVEDAAVLIDKLVAEKDA 140
>Os11g0521500 Similar to Acyl carrier protein, chloroplast precursor (ACP)
(ACP05) (Clone 29C08)
Length = 148
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 81/113 (71%), Gaps = 6/113 (5%)
Query: 29 ISRRSSVSFNSQ--RISFMSIRSRPSQLRFKICCSAKKETVDKVCNIVKTQLALPEGTAV 86
IS R+ VS + R +S+RS RF++ C+AK ETV KV IVK QLAL E +
Sbjct: 29 ISSRNLVSMKTMTARRGLVSLRSP----RFRVFCAAKAETVGKVMQIVKQQLALGEEAKL 84
Query: 87 TGESKFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDAANLIEKLV 139
ES+F+ELGADSLDTVEIVM LEEEF ITV+E +AQ I T+QDAA+LI+KLV
Sbjct: 85 APESQFTELGADSLDTVEIVMALEEEFGITVEEDNAQSITTIQDAADLIDKLV 137
>Os09g0539800 Similar to Acyl carrier protein III, chloroplast precursor (ACP
III)
Length = 72
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 60/68 (88%)
Query: 72 NIVKTQLALPEGTAVTGESKFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDA 131
+IVK QL LPEGT VTG SKF++LGADSLDTVEIVMGLEE F I+VDE+SAQ IATV+DA
Sbjct: 1 DIVKKQLVLPEGTDVTGASKFTDLGADSLDTVEIVMGLEEAFKISVDESSAQSIATVEDA 60
Query: 132 ANLIEKLV 139
A LI+K+V
Sbjct: 61 AELIDKIV 68
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.127 0.333
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,053,557
Number of extensions: 99513
Number of successful extensions: 271
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 5
Length of query: 144
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 53
Effective length of database: 12,284,327
Effective search space: 651069331
Effective search space used: 651069331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 151 (62.8 bits)