Os03g0856300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Acyl carrier protein III, chloroplast precursor (ACP III).
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Os03g0856300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Acyl carrier protein III, chloroplast precursor (ACP III).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.92 | 0.335 | 10.2 | -3.69 | 0.537 | 1.08 | -0.0221 | -1.49 | -1.01 | 14 | 21.13 | 1320 | -- | -- |
| 52.68 | 0.338 | 10.2 | -3.28 | 0.55 | 1.07 | 0.078 | -- | -0.903 | 14 | 19.53 | 1271 | -- | -- |
| 50.91 | 0.332 | 10.3 | -3.69 | 0.53 | 1.07 | -- | -1.47 | -1 | 14.1 | 21.19 | 1336 | -- | -- |
| 52.67 | 0.338 | 10.2 | -3.26 | 0.553 | 1.03 | -- | -- | -0.889 | 14 | 20.08 | 1271 | -- | -- |
| 62.14 | 0.367 | 10.2 | -3.66 | -- | 1.06 | -- | -1.36 | -1 | -- | 21.27 | 1683 | -- | -- |
| 83.48 | 0.428 | 10.1 | -2.9 | 0.414 | -- | -0.0283 | -- | -0.657 | 14 | -- | -- | -- | -- |
| 83.48 | 0.428 | 10.1 | -2.9 | 0.414 | -- | -- | -- | -0.657 | 14.1 | -- | -- | -- | -- |
| 62.4 | 0.37 | 10.2 | -3.18 | -- | 1.46 | -- | -- | -0.863 | -- | 14.7 | 1714 | -- | -- |
| 190.62 | 0.643 | 9.96 | -- | 0.395 | -1.68 | -- | -- | 0.193 | 14.2 | 14.69 | 47520 | -- | -- |
| 93.78 | 0.453 | 10.2 | -2.92 | -- | -- | -- | -- | -0.667 | -- | -- | -- | -- | -- |
| 305.11 | 0.817 | 10.1 | -- | 0.469 | -- | -- | -- | -0.334 | 14.2 | -- | -- | -- | -- |
| 144.89 | 0.561 | 10 | -- | -- | -1.81 | -- | -- | -0.52 | -- | 35.38 | 47378 | -- | -- |
| 318.24 | 0.833 | 10.1 | -- | -- | -- | -- | -- | -0.343 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 4 | 49.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 8 | 49.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 37 | 50.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 49 | 50.16 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 333 | 51.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 371 | 51.30 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 397 | 51.36 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 419 | 51.42 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 20 |
| 469 | 51.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 631 | 51.94 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 633 | 51.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 637 | 51.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 693 | 52.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 710 | 52.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 739 | 52.16 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 820 | 52.31 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 884 | 52.42 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 898 | 52.44 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 902 | 52.45 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 964 | 52.51 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |