BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0856300 Os03g0856300|AK108342
         (140 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0856300  Similar to Acyl carrier protein III, chloropla...   278   1e-75
Os12g0534200  Similar to Acyl carrier protein I, chloroplast...   145   9e-36
Os08g0549300  Similar to Acyl carrier protein III, chloropla...   143   4e-35
Os09g0539800  Similar to Acyl carrier protein III, chloropla...   100   3e-22
Os11g0521500  Similar to Acyl carrier protein, chloroplast p...    99   8e-22

>Os03g0856300 Similar to Acyl carrier protein III, chloroplast precursor (ACP
           III)
          Length = 140

 Score =  278 bits (711), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MAAPITAATSPLSPASRVQVMCSMLNPTSASFSRQTASFPSIRLRPVPSRFQALSCSAKQ 60
           MAAPITAATSPLSPASRVQVMCSMLNPTSASFSRQTASFPSIRLRPVPSRFQALSCSAKQ
Sbjct: 1   MAAPITAATSPLSPASRVQVMCSMLNPTSASFSRQTASFPSIRLRPVPSRFQALSCSAKQ 60

Query: 61  DTIDKVCEIVKNQLAVDEGTAVSGETKFVDLGADSLDTVEIVMGLEEAFQITVDESSAQV 120
           DTIDKVCEIVKNQLAVDEGTAVSGETKFVDLGADSLDTVEIVMGLEEAFQITVDESSAQV
Sbjct: 61  DTIDKVCEIVKNQLAVDEGTAVSGETKFVDLGADSLDTVEIVMGLEEAFQITVDESSAQV 120

Query: 121 IQTVEDAAVLIDKLVAEKDA 140
           IQTVEDAAVLIDKLVAEKDA
Sbjct: 121 IQTVEDAAVLIDKLVAEKDA 140



>Os12g0534200 Similar to Acyl carrier protein I, chloroplast precursor (ACP I)
          Length = 144

 Score =  145 bits (366), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 77/113 (68%), Positives = 91/113 (80%), Gaps = 1/113 (0%)

Query: 28  TSASFSRQTASFPSIRLRPVPSRFQALSCSAKQDTIDKVCEIVKNQLAVDEGTAVSGETK 87
           +S SF+ Q  SF SIR RP   RF+ + CSAK++T+DKVC IVK QLA+ EGTAV+GE+K
Sbjct: 33  SSVSFNSQRISFMSIRSRPSQLRFK-ICCSAKKETVDKVCNIVKTQLALPEGTAVTGESK 91

Query: 88  FVDLGADSLDTVEIVMGLEEAFQITVDESSAQVIQTVEDAAVLIDKLVAEKDA 140
           F +LGADSLDTVEIVMGLEE F ITVDE+SAQ I TV+DAA LI+KLV EK A
Sbjct: 92  FSELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDAANLIEKLVLEKAA 144



>Os08g0549300 Similar to Acyl carrier protein III, chloroplast precursor (ACP
           III)
          Length = 138

 Score =  143 bits (361), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 81/133 (60%), Positives = 101/133 (75%), Gaps = 5/133 (3%)

Query: 8   ATSPLSPASRVQVMCSMLNPTSASFSRQTASFPSIRLRPVPSRFQALSCSAKQDTIDKVC 67
           A S LS A+ V+ +    N  S + +R+  +F  +RL+PVP RF A+ C+AK++T++KVC
Sbjct: 6   AGSALSFATPVKAV--KTNSISFTSARKGNAF--LRLQPVPMRF-AVCCAAKKETVEKVC 60

Query: 68  EIVKNQLAVDEGTAVSGETKFVDLGADSLDTVEIVMGLEEAFQITVDESSAQVIQTVEDA 127
           +IVK QLAV EGT VSG +KF DLGADSLDTVEIVMGLEE F I+V+ESSAQ I TVEDA
Sbjct: 61  DIVKKQLAVPEGTEVSGASKFSDLGADSLDTVEIVMGLEEEFHISVEESSAQSIATVEDA 120

Query: 128 AVLIDKLVAEKDA 140
           A LIDKLV +K A
Sbjct: 121 AALIDKLVEQKSA 133



>Os09g0539800 Similar to Acyl carrier protein III, chloroplast precursor (ACP
           III)
          Length = 72

 Score =  100 bits (249), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 60/69 (86%)

Query: 68  EIVKNQLAVDEGTAVSGETKFVDLGADSLDTVEIVMGLEEAFQITVDESSAQVIQTVEDA 127
           +IVK QL + EGT V+G +KF DLGADSLDTVEIVMGLEEAF+I+VDESSAQ I TVEDA
Sbjct: 1   DIVKKQLVLPEGTDVTGASKFTDLGADSLDTVEIVMGLEEAFKISVDESSAQSIATVEDA 60

Query: 128 AVLIDKLVA 136
           A LIDK+V+
Sbjct: 61  AELIDKIVS 69



>Os11g0521500 Similar to Acyl carrier protein, chloroplast precursor (ACP)
           (ACP05) (Clone 29C08)
          Length = 148

 Score = 99.4 bits (246), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 67/87 (77%), Gaps = 1/87 (1%)

Query: 50  RFQALSCSAKQDTIDKVCEIVKNQLAVDEGTAVSGETKFVDLGADSLDTVEIVMGLEEAF 109
           RF+   C+AK +T+ KV +IVK QLA+ E   ++ E++F +LGADSLDTVEIVM LEE F
Sbjct: 53  RFRVF-CAAKAETVGKVMQIVKQQLALGEEAKLAPESQFTELGADSLDTVEIVMALEEEF 111

Query: 110 QITVDESSAQVIQTVEDAAVLIDKLVA 136
            ITV+E +AQ I T++DAA LIDKLVA
Sbjct: 112 GITVEEDNAQSITTIQDAADLIDKLVA 138



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.125    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,010,630
Number of extensions: 147663
Number of successful extensions: 520
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 520
Number of HSP's successfully gapped: 5
Length of query: 140
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 49
Effective length of database: 12,284,327
Effective search space: 601932023
Effective search space used: 601932023
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 150 (62.4 bits)