Os09g0539800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Acyl carrier protein III, chloroplast precursor (ACP III).
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Os09g0539800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Acyl carrier protein III, chloroplast precursor (ACP III).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.96 | 0.319 | 10.8 | -1.27 | 0.375 | -1.09 | -0.313 | 1.79 | -0.195 | 5.6 | 23.6 | 4925 | -- | -- |
| 49.13 | 0.326 | 10.7 | -0.68 | 0.357 | -1.06 | -0.389 | -- | -0.0746 | 5.4 | 23.2 | 4830 | -- | -- |
| 46.13 | 0.316 | 10.8 | -1.27 | 0.376 | -1.08 | -- | 1.75 | -0.201 | 5.76 | 23.6 | 4951 | -- | -- |
| 49.3 | 0.327 | 10.7 | -0.686 | 0.369 | -1.05 | -- | -- | -0.0728 | 5.68 | 23.2 | 4836 | -- | -- |
| 52.49 | 0.337 | 10.8 | -1.23 | -- | -1.09 | -- | 1.67 | -0.198 | -- | 23.59 | 4289 | -- | -- |
| 88.27 | 0.44 | 10.6 | -0.143 | 0.392 | -- | -0.319 | -- | 0.333 | 5.11 | -- | -- | -- | -- |
| 88.52 | 0.441 | 10.6 | -0.142 | 0.391 | -- | -- | -- | 0.334 | 5.23 | -- | -- | -- | -- |
| 55.71 | 0.348 | 10.7 | -0.668 | -- | -1.07 | -- | -- | -0.0734 | -- | 23.2 | 4314 | -- | -- |
| 59.13 | 0.358 | 10.7 | -- | 0.365 | -0.851 | -- | -- | 0.108 | 5.7 | 23.6 | 4812 | -- | -- |
| 96.5 | 0.459 | 10.6 | -0.128 | -- | -- | -- | -- | 0.344 | -- | -- | -- | -- | -- |
| 89.05 | 0.441 | 10.6 | -- | 0.388 | -- | -- | -- | 0.35 | 5.24 | -- | -- | -- | -- |
| 65.15 | 0.376 | 10.7 | -- | -- | -0.856 | -- | -- | 0.101 | -- | 23.51 | 4256 | -- | -- |
| 96.93 | 0.46 | 10.6 | -- | -- | -- | -- | -- | 0.358 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.46 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 4 | 43.76 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 13 |
| 5 | 43.78 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 11 | 43.88 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 24 | 44.12 | wind | 3 | 43200 | > th | dose dependent | sin | 2 | NA |
| 29 | 44.18 | wind | 5 | 43200 | < th | dose independent | sin | 1 | NA |
| 34 | 44.25 | wind | 5 | 43200 | > th | dose independent | sin | 1 | NA |
| 36 | 44.25 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 18 |
| 47 | 44.31 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 18 |
| 74 | 44.42 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 17 |
| 83 | 44.44 | wind | 5 | 43200 | > th | dose dependent | rect. | 2 | 19 |
| 120 | 44.55 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 21 |
| 128 | 44.57 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 173 | 44.68 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 196 | 44.75 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 198 | 44.75 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 203 | 44.76 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 208 | 44.77 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 221 | 44.79 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 238 | 44.82 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 253 | 44.85 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 307 | 44.93 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 385 | 45.06 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 396 | 45.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 427 | 45.15 | wind | 9 | 43200 | < th | dose dependent | rect. | 7 | 8 |
| 432 | 45.16 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 442 | 45.19 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 23 |
| 449 | 45.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 470 | 45.25 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 478 | 45.28 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 502 | 45.34 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 572 | 45.51 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 639 | 45.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 642 | 45.67 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 695 | 45.80 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 702 | 45.82 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 13 |
| 715 | 45.85 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 718 | 45.85 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 846 | 46.09 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 850 | 46.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 22 |
| 861 | 46.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 908 | 46.17 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 920 | 46.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 991 | 46.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 23 |