BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0539800 Os09g0539800|AK058903
         (72 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0539800  Similar to Acyl carrier protein III, chloropla...   137   1e-33
Os08g0549300  Similar to Acyl carrier protein III, chloropla...   116   4e-27
Os12g0534200  Similar to Acyl carrier protein I, chloroplast...   105   8e-24
Os03g0856300  Similar to Acyl carrier protein III, chloropla...   100   2e-22
Os11g0521500  Similar to Acyl carrier protein, chloroplast p...    84   3e-17

>Os09g0539800 Similar to Acyl carrier protein III, chloroplast precursor (ACP
          III)
          Length = 72

 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/72 (100%), Positives = 72/72 (100%)

Query: 1  DIVKKQLVLPEGTDVTGASKFTDLGADSLDTVEIVMGLEEAFKISVDESSAQSIATVEDA 60
          DIVKKQLVLPEGTDVTGASKFTDLGADSLDTVEIVMGLEEAFKISVDESSAQSIATVEDA
Sbjct: 1  DIVKKQLVLPEGTDVTGASKFTDLGADSLDTVEIVMGLEEAFKISVDESSAQSIATVEDA 60

Query: 61 AELIDKIVSNAK 72
          AELIDKIVSNAK
Sbjct: 61 AELIDKIVSNAK 72



>Os08g0549300 Similar to Acyl carrier protein III, chloroplast precursor (ACP
           III)
          Length = 138

 Score =  116 bits (291), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 64/68 (94%)

Query: 1   DIVKKQLVLPEGTDVTGASKFTDLGADSLDTVEIVMGLEEAFKISVDESSAQSIATVEDA 60
           DIVKKQL +PEGT+V+GASKF+DLGADSLDTVEIVMGLEE F ISV+ESSAQSIATVEDA
Sbjct: 61  DIVKKQLAVPEGTEVSGASKFSDLGADSLDTVEIVMGLEEEFHISVEESSAQSIATVEDA 120

Query: 61  AELIDKIV 68
           A LIDK+V
Sbjct: 121 AALIDKLV 128



>Os12g0534200 Similar to Acyl carrier protein I, chloroplast precursor (ACP I)
          Length = 144

 Score =  105 bits (262), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 60/68 (88%)

Query: 1   DIVKKQLVLPEGTDVTGASKFTDLGADSLDTVEIVMGLEEAFKISVDESSAQSIATVEDA 60
           +IVK QL LPEGT VTG SKF++LGADSLDTVEIVMGLEE F I+VDE+SAQ IATV+DA
Sbjct: 72  NIVKTQLALPEGTAVTGESKFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDA 131

Query: 61  AELIDKIV 68
           A LI+K+V
Sbjct: 132 ANLIEKLV 139



>Os03g0856300 Similar to Acyl carrier protein III, chloroplast precursor (ACP
           III)
          Length = 140

 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 60/69 (86%)

Query: 1   DIVKKQLVLPEGTDVTGASKFTDLGADSLDTVEIVMGLEEAFKISVDESSAQSIATVEDA 60
           +IVK QL + EGT V+G +KF DLGADSLDTVEIVMGLEEAF+I+VDESSAQ I TVEDA
Sbjct: 68  EIVKNQLAVDEGTAVSGETKFVDLGADSLDTVEIVMGLEEAFQITVDESSAQVIQTVEDA 127

Query: 61  AELIDKIVS 69
           A LIDK+V+
Sbjct: 128 AVLIDKLVA 136



>Os11g0521500 Similar to Acyl carrier protein, chloroplast precursor (ACP)
           (ACP05) (Clone 29C08)
          Length = 148

 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/70 (61%), Positives = 55/70 (78%)

Query: 1   DIVKKQLVLPEGTDVTGASKFTDLGADSLDTVEIVMGLEEAFKISVDESSAQSIATVEDA 60
            IVK+QL L E   +   S+FT+LGADSLDTVEIVM LEE F I+V+E +AQSI T++DA
Sbjct: 70  QIVKQQLALGEEAKLAPESQFTELGADSLDTVEIVMALEEEFGITVEEDNAQSITTIQDA 129

Query: 61  AELIDKIVSN 70
           A+LIDK+V+ 
Sbjct: 130 ADLIDKLVAG 139



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.127    0.316 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,811,757
Number of extensions: 53517
Number of successful extensions: 165
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 5
Length of query: 72
Length of database: 17,035,801
Length adjustment: 43
Effective length of query: 29
Effective length of database: 14,790,599
Effective search space: 428927371
Effective search space used: 428927371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 149 (62.0 bits)