Os08g0549300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Acyl carrier protein III, chloroplast precursor (ACP III).
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Os08g0549300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Acyl carrier protein III, chloroplast precursor (ACP III).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.53 | 0.268 | 12.2 | -0.121 | 0.469 | -0.0935 | -0.446 | -3.12 | -0.0818 | 4.01 | 12.1 | 3044 | -- | -- |
| 41.28 | 0.302 | 12 | 0.651 | 0.412 | -0.195 | -0.593 | -- | 0.137 | 4.25 | 10.72 | 3529 | -- | -- |
| 32.88 | 0.267 | 12.2 | -0.151 | 0.471 | -0.0683 | -- | -3.15 | -0.0858 | 3.96 | 12.2 | 2741 | -- | -- |
| 39.22 | 0.294 | 12.1 | 0.661 | 0.368 | -0.576 | -- | -- | 0.0985 | 4.21 | 29.1 | 4371 | -- | -- |
| 44.76 | 0.312 | 12.2 | -0.156 | -- | 0.051 | -- | -3.06 | -0.0922 | -- | 12.8 | 2703 | -- | -- |
| 41.65 | 0.303 | 12.1 | 0.613 | 0.461 | -- | -0.548 | -- | 0.11 | 4.04 | -- | -- | -- | -- |
| 42.5 | 0.305 | 12.1 | 0.619 | 0.458 | -- | -- | -- | 0.113 | 4.02 | -- | -- | -- | -- |
| 44.37 | 0.312 | 12.1 | 0.709 | -- | -0.817 | -- | -- | 0.112 | -- | 28.18 | 6153 | -- | -- |
| 50.58 | 0.333 | 12.1 | -- | 0.4 | -0.451 | -- | -- | 0.029 | 4.13 | 29.1 | 4371 | -- | -- |
| 53.93 | 0.343 | 12.1 | 0.638 | -- | -- | -- | -- | 0.125 | -- | -- | -- | -- | -- |
| 52.62 | 0.339 | 12.1 | -- | 0.47 | -- | -- | -- | 0.0441 | 4 | -- | -- | -- | -- |
| 57.44 | 0.354 | 12.1 | -- | -- | -0.706 | -- | -- | 0.0358 | -- | 28.18 | 6153 | -- | -- |
| 64.67 | 0.375 | 12.1 | -- | -- | -- | -- | -- | 0.0545 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.57 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 3 | 31.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 156 | 32.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 211 | 32.55 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 250 | 32.61 | temperature | 15 | 4320 | > th | dose dependent | sin | 15 | NA |
| 269 | 32.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 22 |
| 304 | 32.68 | temperature | 30 | 4320 | < th | dose dependent | sin | 14 | NA |
| 335 | 32.70 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 18 |
| 351 | 32.71 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 18 |
| 471 | 32.79 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 579 | 32.84 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 15 |
| 775 | 32.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 21 |
| 896 | 32.92 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 898 | 32.92 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 977 | 32.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 21 |