BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0549300 Os08g0549300|AK120938
(138 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0549300 Similar to Acyl carrier protein III, chloropla... 249 3e-67
Os12g0534200 Similar to Acyl carrier protein I, chloroplast... 154 2e-38
Os03g0856300 Similar to Acyl carrier protein III, chloropla... 142 8e-35
Os09g0539800 Similar to Acyl carrier protein III, chloropla... 116 6e-27
Os11g0521500 Similar to Acyl carrier protein, chloroplast p... 112 1e-25
>Os08g0549300 Similar to Acyl carrier protein III, chloroplast precursor (ACP
III)
Length = 138
Score = 249 bits (637), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 14 TPVKAVKTNSISFTSARKGNAFLRLQPVPMRFAVCCAAKKETVEKVCDIVKKQLAVPEGT 73
TPVKAVKTNSISFTSARKGNAFLRLQPVPMRFAVCCAAKKETVEKVCDIVKKQLAVPEGT
Sbjct: 14 TPVKAVKTNSISFTSARKGNAFLRLQPVPMRFAVCCAAKKETVEKVCDIVKKQLAVPEGT 73
Query: 74 EVSGASKFSDLGADSLDTVEIVMGLEEEFHISVEESSAQSIATVEDAAALIDKLVEQKSA 133
EVSGASKFSDLGADSLDTVEIVMGLEEEFHISVEESSAQSIATVEDAAALIDKLVEQKSA
Sbjct: 74 EVSGASKFSDLGADSLDTVEIVMGLEEEFHISVEESSAQSIATVEDAAALIDKLVEQKSA 133
Query: 134 EAKSS 138
EAKSS
Sbjct: 134 EAKSS 138
>Os12g0534200 Similar to Acyl carrier protein I, chloroplast precursor (ACP I)
Length = 144
Score = 154 bits (389), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 96/114 (84%)
Query: 20 KTNSISFTSARKGNAFLRLQPVPMRFAVCCAAKKETVEKVCDIVKKQLAVPEGTEVSGAS 79
+ +S+SF S R +R +P +RF +CC+AKKETV+KVC+IVK QLA+PEGT V+G S
Sbjct: 31 RRSSVSFNSQRISFMSIRSRPSQLRFKICCSAKKETVDKVCNIVKTQLALPEGTAVTGES 90
Query: 80 KFSDLGADSLDTVEIVMGLEEEFHISVEESSAQSIATVEDAAALIDKLVEQKSA 133
KFS+LGADSLDTVEIVMGLEEEF+I+V+E+SAQ IATV+DAA LI+KLV +K+A
Sbjct: 91 KFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDAANLIEKLVLEKAA 144
>Os03g0856300 Similar to Acyl carrier protein III, chloroplast precursor (ACP
III)
Length = 140
Score = 142 bits (358), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/115 (65%), Positives = 92/115 (80%), Gaps = 3/115 (2%)
Query: 22 NSISFTSARKGNAF--LRLQPVPMRF-AVCCAAKKETVEKVCDIVKKQLAVPEGTEVSGA 78
N S + +R+ +F +RL+PVP RF A+ C+AK++T++KVC+IVK QLAV EGT VSG
Sbjct: 26 NPTSASFSRQTASFPSIRLRPVPSRFQALSCSAKQDTIDKVCEIVKNQLAVDEGTAVSGE 85
Query: 79 SKFSDLGADSLDTVEIVMGLEEEFHISVEESSAQSIATVEDAAALIDKLVEQKSA 133
+KF DLGADSLDTVEIVMGLEE F I+V+ESSAQ I TVEDAA LIDKLV +K A
Sbjct: 86 TKFVDLGADSLDTVEIVMGLEEAFQITVDESSAQVIQTVEDAAVLIDKLVAEKDA 140
>Os09g0539800 Similar to Acyl carrier protein III, chloroplast precursor (ACP
III)
Length = 72
Score = 116 bits (290), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/68 (85%), Positives = 64/68 (94%)
Query: 61 DIVKKQLAVPEGTEVSGASKFSDLGADSLDTVEIVMGLEEEFHISVEESSAQSIATVEDA 120
DIVKKQL +PEGT+V+GASKF+DLGADSLDTVEIVMGLEE F ISV+ESSAQSIATVEDA
Sbjct: 1 DIVKKQLVLPEGTDVTGASKFTDLGADSLDTVEIVMGLEEAFKISVDESSAQSIATVEDA 60
Query: 121 AALIDKLV 128
A LIDK+V
Sbjct: 61 AELIDKIV 68
>Os11g0521500 Similar to Acyl carrier protein, chloroplast precursor (ACP)
(ACP05) (Clone 29C08)
Length = 148
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 79/106 (74%), Gaps = 4/106 (3%)
Query: 23 SISFTSARKGNAFLRLQPVPMRFAVCCAAKKETVEKVCDIVKKQLAVPEGTEVSGASKFS 82
S+ +AR+G LR P RF V CAAK ETV KV IVK+QLA+ E +++ S+F+
Sbjct: 36 SMKTMTARRGLVSLR-SP---RFRVFCAAKAETVGKVMQIVKQQLALGEEAKLAPESQFT 91
Query: 83 DLGADSLDTVEIVMGLEEEFHISVEESSAQSIATVEDAAALIDKLV 128
+LGADSLDTVEIVM LEEEF I+VEE +AQSI T++DAA LIDKLV
Sbjct: 92 ELGADSLDTVEIVMALEEEFGITVEEDNAQSITTIQDAADLIDKLV 137
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.124 0.324
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,297,830
Number of extensions: 117088
Number of successful extensions: 250
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 5
Length of query: 138
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 48
Effective length of database: 12,336,541
Effective search space: 592153968
Effective search space used: 592153968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 150 (62.4 bits)