BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0549300 Os08g0549300|AK120938
(138 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G54580.1 | chr1:20389572-20390770 FORWARD LENGTH=137 125 7e-30
AT1G54630.1 | chr1:20401642-20402919 REVERSE LENGTH=137 124 1e-29
AT5G27200.1 | chr5:9571185-9571989 FORWARD LENGTH=140 118 1e-27
AT3G05020.1 | chr3:1391863-1392878 REVERSE LENGTH=138 108 6e-25
AT4G25050.2 | chr4:12870178-12871024 FORWARD LENGTH=150 102 5e-23
AT1G65290.1 | chr1:24249088-24250366 REVERSE LENGTH=127 49 8e-07
AT2G44620.1 | chr2:18414320-18415065 FORWARD LENGTH=123 47 4e-06
>AT1G54580.1 | chr1:20389572-20390770 FORWARD LENGTH=137
Length = 136
Score = 125 bits (314), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 83/108 (76%)
Query: 25 SFTSARKGNAFLRLQPVPMRFAVCCAAKKETVEKVCDIVKKQLAVPEGTEVSGASKFSDL 84
SF++ R+ + L+ +P R V CAAK ETV+KVC +V+KQL++ E E++ A+KF+ L
Sbjct: 28 SFSNGRRSSLSFNLRQLPTRLTVSCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAAL 87
Query: 85 GADSLDTVEIVMGLEEEFHISVEESSAQSIATVEDAAALIDKLVEQKS 132
GADSLDTVEIVMGLEEEF I + E AQSIATVE AAALI++L+ +K+
Sbjct: 88 GADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLFEKA 135
>AT1G54630.1 | chr1:20401642-20402919 REVERSE LENGTH=137
Length = 136
Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 81/108 (75%)
Query: 25 SFTSARKGNAFLRLQPVPMRFAVCCAAKKETVEKVCDIVKKQLAVPEGTEVSGASKFSDL 84
SF+ + N L+ +P R V CAAK ETV+KVC +V+KQL++ E E++ A+KF+ L
Sbjct: 28 SFSYGSRSNLSFNLRQLPTRLTVYCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAAL 87
Query: 85 GADSLDTVEIVMGLEEEFHISVEESSAQSIATVEDAAALIDKLVEQKS 132
GADSLDTVEIVMGLEEEF I + E AQSIATVE AAALI++L+ +K+
Sbjct: 88 GADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLLEKA 135
>AT5G27200.1 | chr5:9571185-9571989 FORWARD LENGTH=140
Length = 139
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 85/114 (74%), Gaps = 9/114 (7%)
Query: 20 KTNSISFTSARKGNAFLRLQPVPMRFAVCCAAKKETVEKVCDIVKKQLAVPEGTEVSGAS 79
KTN++SF+ R +P R AV CA K+ETVEKV +IVKKQL++ + +V+ +
Sbjct: 35 KTNNLSFSLRR---------LMPARLAVSCAVKQETVEKVSEIVKKQLSLTDDQKVTAGT 85
Query: 80 KFSDLGADSLDTVEIVMGLEEEFHISVEESSAQSIATVEDAAALIDKLVEQKSA 133
KF++LGADSLDTVEIVMGLEEEF I++ E A+ IATV+ AA LI++LV++K+A
Sbjct: 86 KFTELGADSLDTVEIVMGLEEEFGITMAEERAKEIATVQQAAELIEELVQEKTA 139
>AT3G05020.1 | chr3:1391863-1392878 REVERSE LENGTH=138
Length = 137
Score = 108 bits (271), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 71/96 (73%)
Query: 36 LRLQPVPMRFAVCCAAKKETVEKVCDIVKKQLAVPEGTEVSGASKFSDLGADSLDTVEIV 95
LR R +V CAAK+ET+EKV IVKKQL++ +V +KF+DLGADSLDTVEIV
Sbjct: 41 LRRSIPSRRLSVSCAAKQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIV 100
Query: 96 MGLEEEFHISVEESSAQSIATVEDAAALIDKLVEQK 131
MGLEEEF+I + E AQ IATVE AA LI++L+ +K
Sbjct: 101 MGLEEEFNIQMAEEKAQKIATVEQAAELIEELINEK 136
>AT4G25050.2 | chr4:12870178-12871024 FORWARD LENGTH=150
Length = 149
Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 81/129 (62%), Gaps = 19/129 (14%)
Query: 17 KAVKTNSISFTSARKGNAFLRLQPVPMRFAVCCAAKKETVEKVCDIVKKQLAVPEGTEVS 76
KA + S++F LRLQ + CAAK ETV+KV DIVK+QLA+ ++
Sbjct: 24 KASSSQSVTFGRFTSSTKSLRLQ-------ISCAAKAETVQKVSDIVKEQLALAADVPLT 76
Query: 77 GASKFSDLGADSLDT------------VEIVMGLEEEFHISVEESSAQSIATVEDAAALI 124
SKFS LGADSLDT VEIVM LEE+F+ISVEES AQ+I T+++AA LI
Sbjct: 77 AESKFSALGADSLDTVCYTLSVSYHCHVEIVMALEEKFNISVEESDAQNITTIQEAADLI 136
Query: 125 DKLVEQKSA 133
+ LV++K A
Sbjct: 137 EDLVQKKPA 145
>AT1G65290.1 | chr1:24249088-24250366 REVERSE LENGTH=127
Length = 126
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 52 KKETVEKVCDIVKKQLAVPEGTEVSGASKF-SDLGADSLDTVEIVMGLEEEFHISVEESS 110
K E ++V +VK V + ++V+ + F +DLG DSLD+VE+VM LEEEF + ++
Sbjct: 47 KSEVTDRVLSVVKNFQKV-DPSKVTPKANFQNDLGLDSLDSVEVVMALEEEFGFEIPDNE 105
Query: 111 AQSIATVEDAAALI 124
A I +++ A I
Sbjct: 106 ADKIQSIDLAVDFI 119
>AT2G44620.1 | chr2:18414320-18415065 FORWARD LENGTH=123
Length = 122
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 51 AKKETVEKVCDIVKKQLAVPEGTEVSGASKF-SDLGADSLDTVEIVMGLEEEFHISVEES 109
+++ V++V D+VK V + ++V+ F +DLG DSLDTVEIVM +EEEF + + +
Sbjct: 42 SREAVVDRVLDVVKSFPKV-DPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDK 100
Query: 110 SAQSI 114
A I
Sbjct: 101 EADKI 105
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.124 0.324
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,176,696
Number of extensions: 79386
Number of successful extensions: 231
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 7
Length of query: 138
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 50
Effective length of database: 8,693,961
Effective search space: 434698050
Effective search space used: 434698050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 106 (45.4 bits)