BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0539800 Os09g0539800|AK058903
         (72 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27200.1  | chr5:9571185-9571989 FORWARD LENGTH=140             84   2e-17
AT3G05020.1  | chr3:1391863-1392878 REVERSE LENGTH=138             84   2e-17
AT1G54580.1  | chr1:20389572-20390770 FORWARD LENGTH=137           83   3e-17
AT1G54630.1  | chr1:20401642-20402919 REVERSE LENGTH=137           83   3e-17
AT4G25050.2  | chr4:12870178-12871024 FORWARD LENGTH=150           73   3e-14

>AT5G27200.1 | chr5:9571185-9571989 FORWARD LENGTH=140
          Length = 139

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 54/68 (79%)

Query: 1   DIVKKQLVLPEGTDVTGASKFTDLGADSLDTVEIVMGLEEAFKISVDESSAQSIATVEDA 60
           +IVKKQL L +   VT  +KFT+LGADSLDTVEIVMGLEE F I++ E  A+ IATV+ A
Sbjct: 67  EIVKKQLSLTDDQKVTAGTKFTELGADSLDTVEIVMGLEEEFGITMAEERAKEIATVQQA 126

Query: 61  AELIDKIV 68
           AELI+++V
Sbjct: 127 AELIEELV 134



>AT3G05020.1 | chr3:1391863-1392878 REVERSE LENGTH=138
          Length = 137

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 51/71 (71%)

Query: 2   IVKKQLVLPEGTDVTGASKFTDLGADSLDTVEIVMGLEEAFKISVDESSAQSIATVEDAA 61
           IVKKQL L     V   +KF DLGADSLDTVEIVMGLEE F I + E  AQ IATVE AA
Sbjct: 67  IVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNIQMAEEKAQKIATVEQAA 126

Query: 62  ELIDKIVSNAK 72
           ELI+++++  K
Sbjct: 127 ELIEELINEKK 137



>AT1G54580.1 | chr1:20389572-20390770 FORWARD LENGTH=137
          Length = 136

 Score = 82.8 bits (203), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 52/67 (77%)

Query: 2   IVKKQLVLPEGTDVTGASKFTDLGADSLDTVEIVMGLEEAFKISVDESSAQSIATVEDAA 61
           +V+KQL L E  ++T A+KF  LGADSLDTVEIVMGLEE F I + E  AQSIATVE AA
Sbjct: 65  VVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAA 124

Query: 62  ELIDKIV 68
            LI++++
Sbjct: 125 ALIEELL 131



>AT1G54630.1 | chr1:20401642-20402919 REVERSE LENGTH=137
          Length = 136

 Score = 82.8 bits (203), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 52/67 (77%)

Query: 2   IVKKQLVLPEGTDVTGASKFTDLGADSLDTVEIVMGLEEAFKISVDESSAQSIATVEDAA 61
           +V+KQL L E  ++T A+KF  LGADSLDTVEIVMGLEE F I + E  AQSIATVE AA
Sbjct: 65  VVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAA 124

Query: 62  ELIDKIV 68
            LI++++
Sbjct: 125 ALIEELL 131



>AT4G25050.2 | chr4:12870178-12871024 FORWARD LENGTH=150
          Length = 149

 Score = 72.8 bits (177), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 53/80 (66%), Gaps = 12/80 (15%)

Query: 1   DIVKKQLVLPEGTDVTGASKFTDLGADSLDTV------------EIVMGLEEAFKISVDE 48
           DIVK+QL L     +T  SKF+ LGADSLDTV            EIVM LEE F ISV+E
Sbjct: 61  DIVKEQLALAADVPLTAESKFSALGADSLDTVCYTLSVSYHCHVEIVMALEEKFNISVEE 120

Query: 49  SSAQSIATVEDAAELIDKIV 68
           S AQ+I T+++AA+LI+ +V
Sbjct: 121 SDAQNITTIQEAADLIEDLV 140



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.308    0.127    0.316 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,218,961
Number of extensions: 36924
Number of successful extensions: 107
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 5
Length of query: 72
Length of database: 11,106,569
Length adjustment: 44
Effective length of query: 28
Effective length of database: 9,900,265
Effective search space: 277207420
Effective search space used: 277207420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 104 (44.7 bits)