BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0856300 Os03g0856300|AK108342
(140 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G05020.1 | chr3:1391863-1392878 REVERSE LENGTH=138 109 5e-25
AT1G54580.1 | chr1:20389572-20390770 FORWARD LENGTH=137 108 1e-24
AT1G54630.1 | chr1:20401642-20402919 REVERSE LENGTH=137 108 1e-24
AT5G27200.1 | chr5:9571185-9571989 FORWARD LENGTH=140 107 2e-24
AT4G25050.2 | chr4:12870178-12871024 FORWARD LENGTH=150 93 4e-20
AT1G65290.1 | chr1:24249088-24250366 REVERSE LENGTH=127 49 8e-07
AT2G44620.1 | chr2:18414320-18415065 FORWARD LENGTH=123 47 4e-06
>AT3G05020.1 | chr3:1391863-1392878 REVERSE LENGTH=138
Length = 137
Score = 109 bits (273), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 69/94 (73%)
Query: 45 RPVPSRFQALSCSAKQDTIDKVCEIVKNQLAVDEGTAVSGETKFVDLGADSLDTVEIVMG 104
R +PSR ++SC+AKQ+TI+KV IVK QL++ V ETKF DLGADSLDTVEIVMG
Sbjct: 43 RSIPSRRLSVSCAAKQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMG 102
Query: 105 LEEAFQITVDESSAQVIQTVEDAAVLIDKLVAEK 138
LEE F I + E AQ I TVE AA LI++L+ EK
Sbjct: 103 LEEEFNIQMAEEKAQKIATVEQAAELIEELINEK 136
>AT1G54580.1 | chr1:20389572-20390770 FORWARD LENGTH=137
Length = 136
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Query: 31 SFSRQTASFPSIRLRPVPSRFQALSCSAKQDTIDKVCEIVKNQLAVDEGTAVSGETKFVD 90
SFS S S LR +P+R +SC+AK +T+DKVC +V+ QL++ E ++ TKF
Sbjct: 28 SFSNGRRSSLSFNLRQLPTRL-TVSCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAA 86
Query: 91 LGADSLDTVEIVMGLEEAFQITVDESSAQVIQTVEDAAVLIDKLVAEK 138
LGADSLDTVEIVMGLEE F I + E AQ I TVE AA LI++L+ EK
Sbjct: 87 LGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLFEK 134
>AT1G54630.1 | chr1:20401642-20402919 REVERSE LENGTH=137
Length = 136
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 87/138 (63%), Gaps = 4/138 (2%)
Query: 1 MAAPITAATSPLSPASRVQVMCSMLNPTSASFSRQTASFPSIRLRPVPSRFQALSCSAKQ 60
MA+ T+A++ L R V+ + SFS + S S LR +P+R + C+AK
Sbjct: 1 MASIATSASTSLQARPRQLVIGA---KQVKSFSYGSRSNLSFNLRQLPTRL-TVYCAAKP 56
Query: 61 DTIDKVCEIVKNQLAVDEGTAVSGETKFVDLGADSLDTVEIVMGLEEAFQITVDESSAQV 120
+T+DKVC +V+ QL++ E ++ TKF LGADSLDTVEIVMGLEE F I + E AQ
Sbjct: 57 ETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQS 116
Query: 121 IQTVEDAAVLIDKLVAEK 138
I TVE AA LI++L+ EK
Sbjct: 117 IATVEQAAALIEELLLEK 134
>AT5G27200.1 | chr5:9571185-9571989 FORWARD LENGTH=140
Length = 139
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 89/141 (63%), Gaps = 13/141 (9%)
Query: 1 MAAPITAATSPLSPASRVQVMCSMLNPTSASFSRQTASFPSIRLRPV-PSRFQALSCSAK 59
M AP +A T+ C LN + F+ + + S LR + P+R A+SC+ K
Sbjct: 11 MQAPFSATTTRF---------C--LNKQATIFNNEKTNNLSFSLRRLMPARL-AVSCAVK 58
Query: 60 QDTIDKVCEIVKNQLAVDEGTAVSGETKFVDLGADSLDTVEIVMGLEEAFQITVDESSAQ 119
Q+T++KV EIVK QL++ + V+ TKF +LGADSLDTVEIVMGLEE F IT+ E A+
Sbjct: 59 QETVEKVSEIVKKQLSLTDDQKVTAGTKFTELGADSLDTVEIVMGLEEEFGITMAEERAK 118
Query: 120 VIQTVEDAAVLIDKLVAEKDA 140
I TV+ AA LI++LV EK A
Sbjct: 119 EIATVQQAAELIEELVQEKTA 139
>AT4G25050.2 | chr4:12870178-12871024 FORWARD LENGTH=150
Length = 149
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 92/153 (60%), Gaps = 21/153 (13%)
Query: 1 MAAPITAATSPLSPASRV-QVMCSMLNPTSASFSRQTASFPSIRLRPVPSRFQALSCSAK 59
MA+ T + S +P++ + QV+ + S +F R T+S S+RL+ +SC+AK
Sbjct: 1 MASLSTTSLSFKAPSTTISQVLRKASSSQSVTFGRFTSSTKSLRLQ--------ISCAAK 52
Query: 60 QDTIDKVCEIVKNQLAVDEGTAVSGETKFVDLGADSLDT------------VEIVMGLEE 107
+T+ KV +IVK QLA+ ++ E+KF LGADSLDT VEIVM LEE
Sbjct: 53 AETVQKVSDIVKEQLALAADVPLTAESKFSALGADSLDTVCYTLSVSYHCHVEIVMALEE 112
Query: 108 AFQITVDESSAQVIQTVEDAAVLIDKLVAEKDA 140
F I+V+ES AQ I T+++AA LI+ LV +K A
Sbjct: 113 KFNISVEESDAQNITTIQEAADLIEDLVQKKPA 145
>AT1G65290.1 | chr1:24249088-24250366 REVERSE LENGTH=127
Length = 126
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 59 KQDTIDKVCEIVKNQLAVDEGTAVSGETKFVDLGADSLDTVEIVMGLEEAFQITVDESSA 118
K + D+V +VKN VD DLG DSLD+VE+VM LEE F + ++ A
Sbjct: 47 KSEVTDRVLSVVKNFQKVDPSKVTPKANFQNDLGLDSLDSVEVVMALEEEFGFEIPDNEA 106
Query: 119 QVIQTVEDAAVLI 131
IQ+++ A I
Sbjct: 107 DKIQSIDLAVDFI 119
>AT2G44620.1 | chr2:18414320-18415065 FORWARD LENGTH=123
Length = 122
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 58 AKQDTIDKVCEIVKNQLAVDEGTAVSGETKF-VDLGADSLDTVEIVMGLEEAFQITVDES 116
+++ +D+V ++VK+ VD + V+ E F DLG DSLDTVEIVM +EE F++ + +
Sbjct: 42 SREAVVDRVLDVVKSFPKVDP-SKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDK 100
Query: 117 SAQVIQT 123
A I +
Sbjct: 101 EADKIDS 107
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.125 0.333
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,545,039
Number of extensions: 92052
Number of successful extensions: 338
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 7
Length of query: 140
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 52
Effective length of database: 8,693,961
Effective search space: 452085972
Effective search space used: 452085972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 106 (45.4 bits)