BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0292000 Os11g0292000|Os11g0292000
         (928 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0292000  Zinc finger, FYVE/PHD-type domain containing p...  1689   0.0  
Os12g0161500  Hypothetical protein                                 87   5e-17
Os10g0572500  Zinc finger, FYVE/PHD-type domain containing p...    86   1e-16
Os11g0160100  Zinc finger, FYVE/PHD-type domain containing p...    81   4e-15
Os03g0213600  Conserved hypothetical protein                       78   3e-14
Os03g0421000  Zinc finger, FYVE/PHD-type domain containing p...    72   2e-12

>Os11g0292000 Zinc finger, FYVE/PHD-type domain containing protein
          Length = 928

 Score = 1689 bits (4375), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 828/928 (89%), Positives = 828/928 (89%)

Query: 1   MRRRMDDLVSNAQENNVTYVDXXXXXXXDQQVKICDICGDVGEEKKLAICSRCNDGAEHI 60
           MRRRMDDLVSNAQENNVTYVD       DQQVKICDICGDVGEEKKLAICSRCNDGAEHI
Sbjct: 1   MRRRMDDLVSNAQENNVTYVDSSSEESEDQQVKICDICGDVGEEKKLAICSRCNDGAEHI 60

Query: 61  YCMRVMMPEVPEGDWFCEECRTEMQIEKEKSILEKSQVKVKVCDICGDIGAEEKLAVCSR 120
           YCMRVMMPEVPEGDWFCEECRTEMQIEKEKSILEKSQVKVKVCDICGDIGAEEKLAVCSR
Sbjct: 61  YCMRVMMPEVPEGDWFCEECRTEMQIEKEKSILEKSQVKVKVCDICGDIGAEEKLAVCSR 120

Query: 121 CNDGAEHIYCMRVMMQEVPKAKWLCETCHSEVESEKRKNKIETSELKVGGSKGPMNKPSS 180
           CNDGAEHIYCMRVMMQEVPKAKWLCETCHSEVESEKRKNKIETSELKVGGSKGPMNKPSS
Sbjct: 121 CNDGAEHIYCMRVMMQEVPKAKWLCETCHSEVESEKRKNKIETSELKVGGSKGPMNKPSS 180

Query: 181 SENGVDAENVGSNMSNRGNEMNSVNKRKDGDAGITSLVRQNPVSRESSFKLDGKKGKDPA 240
           SENGVDAENVGSNMSNRGNEMNSVNKRKDGDAGITSLVRQNPVSRESSFKLDGKKGKDPA
Sbjct: 181 SENGVDAENVGSNMSNRGNEMNSVNKRKDGDAGITSLVRQNPVSRESSFKLDGKKGKDPA 240

Query: 241 GHVSTLLTSNYPKNQMAPLRGQLSKSTSFNNSKVPKVKQLLNEVPQKPKTFKDSLSTPMR 300
           GHVSTLLTSNYPKNQMAPLRGQLSKSTSFNNSKVPKVKQLLNEVPQKPKTFKDSLSTPMR
Sbjct: 241 GHVSTLLTSNYPKNQMAPLRGQLSKSTSFNNSKVPKVKQLLNEVPQKPKTFKDSLSTPMR 300

Query: 301 KEGPMGILAKSASFKKPKCFEPVNKAKPSTVMNPLVSENARNDILTSILGSRSLTGSVTV 360
           KEGPMGILAKSASFKKPKCFEPVNKAKPSTVMNPLVSENARNDILTSILGSRSLTGSVTV
Sbjct: 301 KEGPMGILAKSASFKKPKCFEPVNKAKPSTVMNPLVSENARNDILTSILGSRSLTGSVTV 360

Query: 361 PVHSKAQSSAQHLNKGNRMADSNILGTSGGEGARSFLGHCGIKKPPHTKGHANIGMLGSG 420
           PVHSKAQSSAQHLNKGNRMADSNILGTSGGEGARSFLGHCGIKKPPHTKGHANIGMLGSG
Sbjct: 361 PVHSKAQSSAQHLNKGNRMADSNILGTSGGEGARSFLGHCGIKKPPHTKGHANIGMLGSG 420

Query: 421 AQKKTIQVPDSSHLDDQIKXXXXXXXXXXXXXXXXXXXXLRDHQTVPSMRGRSVDSISAM 480
           AQKKTIQVPDSSHLDDQIK                    LRDHQTVPSMRGRSVDSISAM
Sbjct: 421 AQKKTIQVPDSSHLDDQIKSPSSLVPSNSSSVSIPGSASLRDHQTVPSMRGRSVDSISAM 480

Query: 481 SKDMKEKKITFSSQSFSPSCKHIASTIPELDYIWRGGFELSRTVRSPVLCEGLQAHLSCF 540
           SKDMKEKKITFSSQSFSPSCKHIASTIPELDYIWRGGFELSRTVRSPVLCEGLQAHLSCF
Sbjct: 481 SKDMKEKKITFSSQSFSPSCKHIASTIPELDYIWRGGFELSRTVRSPVLCEGLQAHLSCF 540

Query: 541 ASPKVLEVAKKFPSNVQLEELPRQNLWPPQFHDNGPTIDSIALFFFARDTESYEIHYRKL 600
           ASPKVLEVAKKFPSNVQLEELPRQNLWPPQFHDNGPTIDSIALFFFARDTESYEIHYRKL
Sbjct: 541 ASPKVLEVAKKFPSNVQLEELPRQNLWPPQFHDNGPTIDSIALFFFARDTESYEIHYRKL 600

Query: 601 VENMLKDDLALRGNIETAELLIFASNTLPNNFQRWNMFHFLWGVFRVRRKDANLPPDLPI 660
           VENMLKDDLALRGNIETAELLIFASNTLPNNFQRWNMFHFLWGVFRVRRKDANLPPDLPI
Sbjct: 601 VENMLKDDLALRGNIETAELLIFASNTLPNNFQRWNMFHFLWGVFRVRRKDANLPPDLPI 660

Query: 661 YDNNQGCSNGVKSLFHPLVGNPLDGQSHDSITAMFPTNNSSAIDDFLPVPTRKDLKLAYS 720
           YDNNQGCSNGVKSLFHPLVGNPLDGQSHDSITAMFPTNNSSAIDDFLPVPTRKDLKLAYS
Sbjct: 661 YDNNQGCSNGVKSLFHPLVGNPLDGQSHDSITAMFPTNNSSAIDDFLPVPTRKDLKLAYS 720

Query: 721 EQKEKMGYPSVGNGCDVNFDVNMKLNTCSFSVIHGKGNESTNNKMDNAEHLMDGDSVNAT 780
           EQKEKMGYPSVGNGCDVNFDVNMKLNTCSFSVIHGKGNESTNNKMDNAEHLMDGDSVNAT
Sbjct: 721 EQKEKMGYPSVGNGCDVNFDVNMKLNTCSFSVIHGKGNESTNNKMDNAEHLMDGDSVNAT 780

Query: 781 GVKQKCNTPGGGGKSXXXXXXXXXXXXXXXXSGLSXXXXXXXXXXXXXXXXXXXXXXXXX 840
           GVKQKCNTPGGGGKS                SGLS                         
Sbjct: 781 GVKQKCNTPGGGGKSVVAALAVAFFLLAAFASGLSTADATSGRGTSGGGGSGAARLRPAP 840

Query: 841 XXXXXXXXVGDATSXXXXXXXXXXXXXXLWQAPSGAAVRWGRRRLLPSHXXXXXXXXXXA 900
                   VGDATS              LWQAPSGAAVRWGRRRLLPSH          A
Sbjct: 841 PTLAPHPLVGDATSGRCTCGGGGNGAARLWQAPSGAAVRWGRRRLLPSHGHEGGGCGDGA 900

Query: 901 LRPNRQLRGARAARGWRTSQATPWQGPQ 928
           LRPNRQLRGARAARGWRTSQATPWQGPQ
Sbjct: 901 LRPNRQLRGARAARGWRTSQATPWQGPQ 928



>Os12g0161500 Hypothetical protein
          Length = 530

 Score = 87.4 bits (215), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 8/170 (4%)

Query: 482 KDMKEKKITFSSQSFSPSCKHIASTIPELDYIWRGGFELSRTVRSPVLCEGLQAHLSCFA 541
           KD  +  +  +++S      H    I E   IW G F++      P       AHLS  +
Sbjct: 224 KDSTKVAMPIAAESIKRQFYHCIQPIDEP--IWSGIFKIGGNDYIP-----FSAHLSTKS 276

Query: 542 SPKVLEVAKKFPSNVQLEELPRQNLWPPQFHDNGPTIDSIALFFFARDTESYEIHYRKLV 601
             KV +++   PS VQ+ +L R  +WP     + PT DSI L+FF       +    +LV
Sbjct: 277 CKKVWDLSVSIPSIVQVTKLSRSVVWPKSLEASSPTDDSIGLYFFPPKMR-LDKGMDQLV 335

Query: 602 ENMLKDDLALRGNIETAELLIFASNTLPNNFQRWNMFHFLWGVFRVRRKD 651
           + +++ D+AL   I  A++L+F S  LP  ++ +   H+LWGVF+ R  D
Sbjct: 336 KEIVEKDMALSAVIGEAQMLMFPSTLLPEKYRTFQGKHYLWGVFKRRGGD 385



>Os10g0572500 Zinc finger, FYVE/PHD-type domain containing protein
          Length = 719

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 39/49 (79%)

Query: 32  VKICDICGDVGEEKKLAICSRCNDGAEHIYCMRVMMPEVPEGDWFCEEC 80
           V +CDICGDVG E  LA C+RC +GAEH YCMRV + +VP+G+W CEEC
Sbjct: 421 VNVCDICGDVGREYLLATCTRCLEGAEHTYCMRVKLEKVPDGEWLCEEC 469



 Score = 83.6 bits (205), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 45/63 (71%), Gaps = 1/63 (1%)

Query: 98  VKVKVCDICGDIGAEEKLAVCSRCNDGAEHIYCMRVMMQEVPKAKWLC-ETCHSEVESEK 156
           + V VCDICGD+G E  LA C+RC +GAEH YCMRV +++VP  +WLC E C  E E++ 
Sbjct: 419 IDVNVCDICGDVGREYLLATCTRCLEGAEHTYCMRVKLEKVPDGEWLCEECCLKEDENQT 478

Query: 157 RKN 159
           R N
Sbjct: 479 RSN 481



>Os11g0160100 Zinc finger, FYVE/PHD-type domain containing protein
          Length = 688

 Score = 80.9 bits (198), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 3/118 (2%)

Query: 535 AHLSCFASPKVLEVAKKFPSNVQLEELPRQNLWPPQFHDNG-PTIDSIALFFFARDTESY 593
           AH S  A  KV E++   P  +++ ELP+   WP  +     P+ +SI LFFF+++T S 
Sbjct: 465 AHFSNKACKKVCELSMSLPQIMKVTELPKLKAWPKSWEKASVPSAESIGLFFFSQNTRSN 524

Query: 594 EIHYRKLVENMLKDDLALRGNIETAELLIFASNTLPNNFQRWNMFHFLWGVFRVRRKD 651
           +  +  LV++++  D+ L  ++  A+LL+F S  LP  ++ +   H+LWGVF+ R KD
Sbjct: 525 K-EFDDLVKHVIDYDIVLETDVSFAKLLVFPSVVLPAEYRVFQGKHYLWGVFK-RSKD 580



>Os03g0213600 Conserved hypothetical protein
          Length = 1044

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 10/143 (6%)

Query: 514 WRGGFELSRTVRSPVLCEGLQAHLSCFASPKVLEVAKKFPSNVQLEELPRQNLWPPQFHD 573
           W+G FE++  +    +C+GL+AH     S +V E +K+ P  ++LE  P  +LWP  F  
Sbjct: 520 WKGKFEVTGELTH--ICDGLEAHFPFEISAQVYEASKQMPEILKLEARPLSHLWPKTFKM 577

Query: 574 NGPTIDSIALFFFA---RDTESYEIHYRKLVENMLKDDLALRGNIETAELLIFASNTLPN 630
             P    I L F +   R   S +     L++N +   + LR  I   ELLIF+S  L  
Sbjct: 578 KPPEGQDIGLCFISSLQRPNGSSD----HLLKN-ISSHIGLRTKIGATELLIFSSKLLTQ 632

Query: 631 NFQRWNMFHFLWGVFRVRRKDAN 653
            +QR     + WGVFR   +  N
Sbjct: 633 EYQRKCDKFYFWGVFRALHRSYN 655



>Os03g0421000 Zinc finger, FYVE/PHD-type domain containing protein
          Length = 436

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 5/149 (3%)

Query: 508 PELDYIWRGGFELSRTVRSPVLCEGLQAHLSCFASPKVLEVAKKFPSNVQLEELPRQNLW 567
           P  +  W G F +S    S       +A+     S KVL V K  PS ++L+ LPR + W
Sbjct: 286 PPPEICWTGCFLVSNG--SNCNPADFKAYCPSKVSSKVLNVIKSMPSIIELDILPRMDEW 343

Query: 568 PPQFHDNGPTIDSIALFFFARDTESYEIHYRKLVENMLKDDLALRGNIETAELLIFASNT 627
           P  F  N P  + I LFFF+ + +        ++E     +  +R  I   +LLI++S  
Sbjct: 344 PKSFEINPPVYEDIGLFFFSTELDRNGKSQSHVMETSC--NFVMRAYINNIKLLIYSSEV 401

Query: 628 LPNNFQRWNMFHFLWGVF-RVRRKDANLP 655
           LP + Q  +   +LWGVF   +R+  ++P
Sbjct: 402 LPPDSQWIDGESYLWGVFVDPKRRHKSMP 430



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,849,789
Number of extensions: 1244430
Number of successful extensions: 2474
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2468
Number of HSP's successfully gapped: 7
Length of query: 928
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 818
Effective length of database: 11,292,261
Effective search space: 9237069498
Effective search space used: 9237069498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 161 (66.6 bits)