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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0572500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, FYVE/PHD-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.46 (0.0367) R2 : 0.544
β1 : 2.8 (0.138) R2dD : 0.458 R2D : 0.221
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.69 (0.162) R2dE : 0.32 R2E : 0.077
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.553 (0.0814) R2dN8 : 0.069 R2N8 : -0.072
σ : 0.679
deviance : 212.65
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 16.2
memory length : 492
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
192.65 0.652 5.32 3.76 1.04 -1.78 0.685 3.69 0.771 6.79 18.96 1703 -- --
203.79 0.665 5.46 2.9 1.12 -1.87 0.57 -- 0.492 5.87 15.34 2381 -- --
193.69 0.648 5.33 3.76 1.08 -1.8 -- 3.62 0.763 6.74 18.49 1627 -- --
203.71 0.665 5.45 2.87 1.07 -1.93 -- -- 0.507 6.02 14.1 2314 -- --
206.29 0.669 5.35 3.61 -- -2.51 -- 4.4 0.817 -- 18.78 467 -- --
274.12 0.776 5.53 2.13 1.13 -- 0.639 -- 0.12 6.84 -- -- -- --
275.16 0.777 5.53 2.14 1.13 -- -- -- 0.118 6.79 -- -- -- --
212.65 0.679 5.46 2.8 -- -2.69 -- -- 0.553 -- 16.2 492 -- --
374.04 0.901 5.56 -- 0.78 -1.09 -- -- 0.0445 7.27 19.51 361 -- --
342.14 0.864 5.56 2.17 -- -- -- -- 0.14 -- -- -- -- --
395.92 0.931 5.59 -- 1.16 -- -- -- -0.121 6.68 -- -- -- --
397.76 0.929 5.56 -- -- -1.59 -- -- 0.128 -- 20.42 462 -- --
465.86 1.01 5.61 -- -- -- -- -- -0.101 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 187.17 wind 9 43200 > th dose dependent rect. 18 13
2 187.23 temperature 10 720 > th dose dependent rect. 15 21
5 188.12 wind 9 43200 > th dose dependent rect. 19 5
8 188.25 wind 9 43200 > th dose independent rect. 18 13
9 188.28 wind 9 43200 > th dose dependent rect. 19 8
19 188.86 wind 9 43200 < th dose independent rect. 18 13
23 189.08 wind 9 43200 > th dose dependent rect. 17 15
31 189.44 wind 9 43200 < th dose independent rect. 18 6
32 189.48 wind 9 43200 > th dose independent rect. 18 11
35 189.68 temperature 20 1440 > th dose dependent rect. 20 1
36 189.68 temperature 15 90 > th dose dependent rect. 24 23
37 189.72 temperature 20 1440 > th dose dependent rect. 7 1
38 189.80 wind 9 43200 > th dose independent rect. 18 9
39 189.83 wind 9 43200 < th dose independent rect. 18 10
45 189.97 wind 9 43200 > th dose independent rect. 18 6
52 190.30 temperature 30 1440 < th dose dependent rect. 7 1
64 191.03 wind 9 43200 > th dose dependent sin 13 NA
111 192.58 temperature 30 270 < th dose dependent rect. 2 23
120 192.72 radiation 1 14400 > th dose independent rect. 18 12
145 193.10 wind 9 43200 > th dose dependent rect. 19 2
171 193.32 temperature 30 270 < th dose dependent rect. 19 23
172 193.34 wind 7 43200 > th dose dependent rect. 14 21
188 193.44 temperature 20 1440 > th dose dependent rect. 6 21
190 193.45 temperature 30 1440 < th dose dependent rect. 17 16
204 193.55 temperature 30 1440 < th dose dependent rect. 20 1
240 193.70 temperature 30 270 < th dose dependent rect. 8 23
251 193.75 temperature 15 270 > th dose dependent rect. 5 23
285 193.89 wind 9 43200 > th dose independent sin 12 NA
286 193.89 wind 7 43200 > th dose dependent rect. 18 21
320 194.07 temperature 20 1440 > th dose dependent sin 15 NA
322 194.08 temperature 20 1440 > th dose dependent no NA NA
335 194.12 temperature 20 1440 > th dose dependent rect. 1 23
353 194.19 temperature 15 1440 > th dose dependent sin 12 NA
355 194.19 temperature 15 270 > th dose dependent rect. 12 23
364 194.22 temperature 15 270 > th dose dependent rect. 22 23
365 194.22 temperature 30 270 < th dose dependent rect. 15 23
383 194.27 temperature 30 270 < th dose dependent rect. 10 23
386 194.29 temperature 30 270 < th dose dependent no NA NA
409 194.37 humidity 90 14400 > th dose dependent rect. 21 4
490 194.58 temperature 30 1440 < th dose dependent rect. 17 10
496 194.60 wind 7 43200 > th dose independent rect. 6 1
531 194.70 temperature 15 1440 > th dose dependent rect. 2 8
558 194.77 temperature 30 1440 < th dose dependent rect. 18 5
564 194.78 wind 9 43200 < th dose independent rect. 17 22
615 194.91 temperature 30 270 < th dose dependent rect. 12 23
616 194.92 radiation 1 14400 > th dose independent rect. 5 1
625 194.94 radiation 1 14400 < th dose independent rect. 18 12
646 194.99 wind 9 43200 > th dose independent rect. 17 22
655 195.01 radiation 1 14400 < th dose independent rect. 5 1
722 195.14 temperature 30 1440 < th dose dependent sin 11 NA
759 195.22 wind 9 43200 < th dose independent rect. 19 2
863 195.45 wind 7 43200 > th dose dependent rect. 23 22
948 195.62 wind 9 43200 < th dose independent sin 12 NA
953 195.63 atmosphere 995 43200 < th dose independent rect. 13 2
976 195.68 atmosphere 995 43200 < th dose independent rect. 7 9
981 195.70 temperature 15 270 > th dose dependent no NA NA
994 195.72 atmosphere 995 43200 > th dose independent rect. 6 10