BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0572500 Os10g0572500|AK067954
         (719 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02890.1  | chr3:640828-645303 FORWARD LENGTH=995               97   3e-20
AT5G16680.1  | chr5:5467534-5472956 REVERSE LENGTH=1312            82   8e-16
AT4G17850.1  | chr4:9922990-9923850 FORWARD LENGTH=188             70   4e-12
AT5G61100.1  | chr5:24579170-24580327 REVERSE LENGTH=228           57   2e-08
AT5G61110.1  | chr5:24581078-24581991 REVERSE LENGTH=162           52   2e-06

>AT3G02890.1 | chr3:640828-645303 FORWARD LENGTH=995
          Length = 994

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 43/55 (78%)

Query: 419 IDVNVCDICGDVGREYLLATCTRCLEGAEHTYCMRVKLEKVPDGEWLCEECCLKE 473
           +DV VCD CGD GRE LLA C+RC +GAEHTYCMRV L+KVP G WLCEEC   E
Sbjct: 210 LDVKVCDTCGDAGREDLLAICSRCSDGAEHTYCMRVMLKKVPKGYWLCEECKFAE 264



>AT5G16680.1 | chr5:5467534-5472956 REVERSE LENGTH=1312
          Length = 1311

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 38/46 (82%)

Query: 420 DVNVCDICGDVGREYLLATCTRCLEGAEHTYCMRVKLEKVPDGEWL 465
           DV VCDICGD GRE LLA C+ C +GAEHTYCMR  L++VP+G+WL
Sbjct: 282 DVKVCDICGDAGREDLLAICSGCSDGAEHTYCMREMLDEVPEGDWL 327




 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 48/103 (46%), Gaps = 13/103 (12%)

Query: 68  KTESGTCNVCCAPCSSCLHRNIALTDSNMDCGSSQTCFA---------RSETKNSSFVRV 118
           K ESGTCNVC APCSSC+HRN+  T S +D  S + C             +   SS V  
Sbjct: 18  KVESGTCNVCSAPCSSCMHRNVGFTGSKLDESSDENCHGVVGSQCSVNEDDLLPSSMVNA 77

Query: 119 DKGLRTKAKGGENDDEFSATSSPASYSENGENKVIARSSVAAD 161
            K L   A    N       SS  + SEN E+K   R S  +D
Sbjct: 78  HKSLNNTASEASN----LVNSSHDALSENAESKETIRCSGISD 116



>AT4G17850.1 | chr4:9922990-9923850 FORWARD LENGTH=188
          Length = 187

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 420 DVNVCDICGDVGREYLLATCTRCLEGAEHTYCMRVKLEKVPDGEWLCEECCLKEDE 475
           ++ VCD CGD G EYLL  C  C  GAEHTYCM  K++KVPD  W C +C  + DE
Sbjct: 36  EITVCDTCGDQGYEYLLVICCNCGVGAEHTYCMMEKIDKVPDS-WSCYDCTKEVDE 90



>AT5G61100.1 | chr5:24579170-24580327 REVERSE LENGTH=228
          Length = 227

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 424 CDICGDVGREYLLATCTRCLEGAEHTYCMRVKLEKVPDGEWLCEEC 469
           C++CG    E L+ TC  C +  EHTYC RV  ++VP   W+CEEC
Sbjct: 34  CEVCGSDANELLMMTCFMCRDTREHTYCARVMFQRVP-RLWICEEC 78



>AT5G61110.1 | chr5:24581078-24581991 REVERSE LENGTH=162
          Length = 161

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 424 CDICGDVGREYLLATCTRCLEGAEHTYCMRVKLEKVPDGEWLCEEC 469
           C++CG    ++ + TC  C +  EH YC RV L  VP   W+CEEC
Sbjct: 33  CEVCGSNANDHAIMTCFLCRDTREHIYCARVHLRSVP-RMWICEEC 77



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.309    0.124    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,541,830
Number of extensions: 669910
Number of successful extensions: 2041
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2046
Number of HSP's successfully gapped: 8
Length of query: 719
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 613
Effective length of database: 8,200,473
Effective search space: 5026889949
Effective search space used: 5026889949
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 115 (48.9 bits)