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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0161500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.49 (0.0278) R2 : 0.395
β1 : 1.58 (0.105) R2dD : 0.364 R2D : 0.14
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.29 (0.103) R2dE : 0.304 R2E : 0.0151
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.353 (0.067) R2dN8 : 0.0691 R2N8 : -0.119
σ : 0.497
deviance : 114.02
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.553
memory length : 15863
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.66 0.499 3.57 0.817 0.122 -1.56 -0.417 -2.51 0.132 3.37 1.239 10066 -- --
119.67 0.509 3.56 1.19 0.208 -1.31 0.461 -- 0.149 15.2 2.23 10524 -- --
113.16 0.495 3.57 0.818 0.129 -1.56 -- -2.54 0.133 3.37 1.237 10051 -- --
119.27 0.509 3.52 1.33 0.13 -1.28 -- -- 0.242 4.25 1.67 10035 -- --
113.97 0.497 3.57 0.834 -- -1.56 -- -2.51 0.137 -- 1.23 10081 -- --
151.71 0.577 3.6 1.09 0.0597 -- -0.537 -- -0.0993 3.43 -- -- -- --
152.51 0.578 3.59 1.1 0.0736 -- -- -- -0.0964 5.7 -- -- -- --
114.02 0.497 3.49 1.58 -- -1.29 -- -- 0.353 -- 1.553 15863 -- --
152.13 0.574 3.54 -- 0.154 -1.16 -- -- 0.135 4.18 6.41 10012 -- --
152.79 0.578 3.59 1.1 -- -- -- -- -0.0946 -- -- -- -- --
184.27 0.635 3.62 -- 0.0919 -- -- -- -0.219 5.16 -- -- -- --
152.7 0.576 3.56 -- -- -1.12 -- -- 0.0613 -- 6.98 10028 -- --
184.71 0.634 3.62 -- -- -- -- -- -0.217 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 111.04 radiation 1 14400 > th dose independent rect. 18 12
2 111.38 radiation 1 14400 < th dose independent rect. 18 12
3 111.58 radiation 1 14400 < th dose dependent rect. 18 10
5 111.61 radiation 1 14400 < th dose dependent rect. 18 7
8 111.65 radiation 1 14400 < th dose dependent rect. 18 1
14 111.76 radiation 1 14400 < th dose independent rect. 9 21
15 111.77 radiation 1 14400 < th dose independent rect. 11 19
19 111.84 radiation 1 14400 > th dose independent rect. 11 19
21 111.85 radiation 1 14400 > th dose independent rect. 9 21
27 111.96 radiation 1 14400 > th dose independent rect. 5 1
28 111.96 radiation 1 14400 < th dose independent rect. 5 1
33 112.07 radiation 1 14400 > th dose independent rect. 16 14
40 112.12 radiation 1 14400 > th dose independent rect. 18 23
46 112.20 radiation 1 14400 < th dose independent rect. 23 7
47 112.22 radiation 1 14400 < th dose independent sin 14 NA
50 112.23 radiation 1 14400 < th dose independent rect. 3 3
59 112.24 radiation 1 14400 < th dose independent rect. 18 23
66 112.27 radiation 1 14400 > th dose independent sin 14 NA
79 112.28 radiation 1 14400 < th dose independent rect. 11 8
83 112.28 radiation 1 14400 < th dose independent rect. 9 10
86 112.28 radiation 1 14400 < th dose independent rect. 11 14
87 112.28 radiation 1 14400 < th dose independent rect. 9 16
88 112.28 radiation 1 14400 < th dose independent rect. 11 16
125 112.32 radiation 1 14400 < th dose independent rect. 23 20
130 112.33 radiation 1 14400 < th dose independent no NA NA
135 112.33 radiation 1 14400 < th dose independent rect. 3 16
148 112.33 radiation 1 14400 < th dose independent rect. 2 22
160 112.34 radiation 1 14400 < th dose independent rect. 5 14
187 112.35 radiation 1 14400 < th dose independent sin 21 NA
207 112.36 radiation 1 14400 > th dose independent rect. 11 8
230 112.37 radiation 1 14400 < th dose independent rect. 16 23
234 112.38 radiation 1 14400 > th dose independent rect. 9 10
286 112.41 radiation 1 14400 < th dose dependent rect. 14 14
287 112.41 radiation 1 14400 < th dose dependent rect. 11 16
294 112.42 radiation 1 14400 < th dose dependent rect. 14 11
296 112.42 radiation 1 14400 < th dose dependent rect. 11 14
335 112.44 radiation 1 14400 < th dose dependent sin 16 NA
337 112.44 radiation 1 14400 < th dose dependent rect. 11 8
342 112.45 radiation 1 14400 < th dose dependent rect. 14 5
370 112.47 radiation 1 14400 > th dose independent no NA NA
376 112.47 radiation 1 14400 > th dose independent rect. 4 15
431 112.47 radiation 40 14400 < th dose dependent rect. 18 1
453 112.49 radiation 1 14400 > th dose independent rect. 16 23
686 112.86 radiation 1 14400 < th dose independent rect. 18 1
702 112.90 radiation 1 14400 < th dose independent rect. 18 6
703 112.91 radiation 1 14400 > th dose independent rect. 5 12
743 112.95 radiation 1 14400 < th dose dependent rect. 18 23
744 112.97 radiation 1 14400 > th dose independent rect. 18 1
956 113.34 radiation 1 14400 < th dose dependent rect. 5 23
959 113.35 radiation 1 14400 < th dose dependent rect. 5 19
964 113.35 radiation 1 14400 < th dose dependent rect. 21 22
965 113.36 radiation 1 14400 < th dose dependent no NA NA
966 113.36 radiation 1 14400 < th dose dependent rect. 5 14
970 113.36 radiation 1 14400 < th dose dependent rect. 23 20
972 113.36 radiation 1 14400 < th dose dependent rect. 2 22
978 113.37 radiation 1 14400 < th dose dependent rect. 2 17