Os11g0292000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, FYVE/PHD-type domain containing protein.
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Os11g0292000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, FYVE/PHD-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.23 | 0.41 | 5.91 | 1.03 | 0.682 | -0.808 | -0.39 | 3.15 | 0.596 | 21 | 24.42 | 1874 | -- | -- |
| 79.59 | 0.416 | 5.98 | 0.165 | 0.578 | -0.41 | -0.341 | -- | 0.485 | 21.5 | 26.12 | 9823 | -- | -- |
| 76.71 | 0.408 | 5.92 | 1.02 | 0.684 | -0.824 | -- | 3.15 | 0.577 | 20.9 | 24.84 | 1860 | -- | -- |
| 79.45 | 0.415 | 5.98 | 0.287 | 0.611 | -0.483 | -- | -- | 0.488 | 21.5 | 26.7 | 11107 | -- | -- |
| 100.63 | 0.467 | 5.95 | 0.622 | -- | -0.627 | -- | 1.69 | 0.407 | -- | 26.2 | 3038 | -- | -- |
| 87.51 | 0.439 | 6.02 | 0.0661 | 0.583 | -- | -0.339 | -- | 0.315 | 21.3 | -- | -- | -- | -- |
| 87.91 | 0.439 | 6.02 | 0.079 | 0.585 | -- | -- | -- | 0.316 | 21.2 | -- | -- | -- | -- |
| 100.06 | 0.466 | 5.96 | 0.285 | -- | -0.454 | -- | -- | 0.491 | -- | 26.9 | 11605 | -- | -- |
| 81.31 | 0.42 | 5.99 | -- | 0.609 | -0.408 | -- | -- | 0.446 | 21.5 | 26.7 | 9813 | -- | -- |
| 107.84 | 0.485 | 6 | 0.0814 | -- | -- | -- | -- | 0.313 | -- | -- | -- | -- | -- |
| 88.08 | 0.439 | 6.02 | -- | 0.585 | -- | -- | -- | 0.307 | 21.3 | -- | -- | -- | -- |
| 101.46 | 0.469 | 5.99 | -- | -- | -0.355 | -- | -- | 0.376 | -- | 27.31 | 7243 | -- | -- |
| 108.01 | 0.485 | 6.01 | -- | -- | -- | -- | -- | 0.304 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.87 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 2 | 20 |
| 3 | 74.53 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 7 | 17 |
| 5 | 74.64 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 8 | 74.70 | humidity | 80.0 | 270 | > th | dose independent | rect. | 7 | 17 |
| 12 | 74.79 | humidity | 80.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 20 | 75.01 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 24 | 75.09 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 15 |
| 26 | 75.12 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 10 |
| 31 | 75.27 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 17 |
| 54 | 75.52 | humidity | 80.0 | 30 | > th | dose independent | rect. | 8 | 18 |
| 61 | 75.61 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 78 | 75.69 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 99 | 75.79 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 14 |
| 108 | 75.84 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 13 |
| 144 | 75.99 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 145 | 75.99 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 171 | 76.16 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 180 | 76.22 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 181 | 76.22 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 182 | 76.22 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 185 | 76.23 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 1 | 7 |
| 189 | 76.23 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 12 | 10 |
| 193 | 76.24 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 203 | 76.26 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 215 | 76.30 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 11 | 19 |
| 218 | 76.31 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 22 | 14 |
| 222 | 76.34 | humidity | 80.0 | 1440 | < th | dose independent | sin | 5 | NA |
| 245 | 76.43 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 248 | 76.44 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 11 | 21 |
| 269 | 76.49 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 270 | 76.49 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 10 |
| 281 | 76.53 | radiation | 30.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 282 | 76.53 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 324 | 76.58 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 327 | 76.59 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 363 | 76.63 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 16 |
| 388 | 76.70 | humidity | 80.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 414 | 76.73 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 9 |
| 415 | 76.73 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 444 | 76.78 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 449 | 76.80 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 462 | 76.82 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 4 | 6 |
| 474 | 76.83 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 18 | 16 |
| 477 | 76.83 | temperature | 10.0 | 270 | > th | dose dependent | sin | 19 | NA |
| 490 | 76.84 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 20 | 14 |
| 520 | 76.87 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 558 | 76.91 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 559 | 76.91 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 23 |
| 563 | 76.91 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 593 | 76.94 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 3 | NA |
| 624 | 76.97 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 629 | 76.98 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 630 | 76.98 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 650 | 77.02 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 656 | 77.03 | humidity | 80.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 658 | 77.03 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 19 | NA |
| 673 | 77.05 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 683 | 77.05 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 690 | 77.06 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 15 |
| 694 | 77.06 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 706 | 77.08 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 725 | 77.09 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 2 | 13 |
| 764 | 77.12 | temperature | 10.0 | 90 | > th | dose dependent | sin | 17 | NA |
| 797 | 77.14 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 801 | 77.14 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 834 | 77.16 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 22 |
| 836 | 77.16 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 872 | 77.17 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 5 | 11 |
| 873 | 77.17 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 922 | 77.19 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 929 | 77.20 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 953 | 77.21 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 968 | 77.22 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 975 | 77.22 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 20 | 23 |