Os03g0421000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, FYVE/PHD-type domain containing protein.
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Os03g0421000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, FYVE/PHD-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.58 | 0.501 | 2.88 | 1.12 | 0.114 | -39.9 | -0.609 | 391 | -0.0157 | 6.49 | 30 | 90 | 8 | 1 |
| 204.61 | 0.666 | 3.16 | 0.254 | 0.277 | -4.58 | 2.26 | -- | -0.383 | 11.3 | 30.76 | 62 | 8.55 | 0.439 |
| 114.48 | 0.498 | 2.88 | 1.11 | 0.115 | -40.1 | -- | 392 | -0.0152 | 5.8 | 30.01 | 90 | 8 | 1 |
| 149.05 | 0.569 | 3.05 | -0.0778 | 0.0172 | -1.69 | -- | -- | -0.216 | 23.3 | 29.78 | 135 | 8.65 | 0.0221 |
| 115.15 | 0.5 | 2.88 | 1.12 | -- | -40.2 | -- | 394 | -0.0109 | -- | 30.01 | 90 | 8 | 1 |
| 142.55 | 0.56 | 3.01 | -0.016 | 0.139 | -- | -0.519 | -- | -0.0258 | 6.56 | -- | -- | -- | -- |
| 143.22 | 0.56 | 3.01 | -0.0233 | 0.136 | -- | -- | -- | -0.0241 | 6.77 | -- | -- | -- | -- |
| 141.2 | 0.553 | 3.02 | 0.0516 | -- | -0.258 | -- | -- | -0.058 | -- | 31.89 | 1181 | 1.49 | 12.3 |
| 138.08 | 0.547 | 3.03 | -- | 0.0866 | 1.65 | -- | -- | -0.0465 | 12.8 | 28.58 | 92 | 8.48 | 0.000853 |
| 144.19 | 0.561 | 3.01 | -0.0202 | -- | -- | -- | -- | -0.0214 | -- | -- | -- | -- | -- |
| 143.23 | 0.56 | 3.01 | -- | 0.136 | -- | -- | -- | -0.0215 | 6.78 | -- | -- | -- | -- |
| 124.04 | 0.519 | 3.04 | -- | -- | 2.45 | -- | -- | -0.0375 | -- | 30.6 | 51 | 8.98 | 0.192 |
| 144.2 | 0.561 | 3.01 | -- | -- | -- | -- | -- | -0.0192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.58 | temperature | 30 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 15 | 113.65 | temperature | 30 | 90 | > th | dose dependent | rect. | 18 | 16 |
| 16 | 113.76 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 1 |
| 109 | 115.18 | temperature | 30 | 90 | > th | dose independent | rect. | 18 | 16 |
| 217 | 125.86 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 1 |
| 310 | 129.55 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 312 | 129.56 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 354 | 132.55 | temperature | 30 | 90 | > th | dose independent | sin | 9 | NA |
| 357 | 132.75 | humidity | 70 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 358 | 132.82 | wind | 1 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 360 | 133.19 | humidity | 70 | 90 | < th | dose dependent | rect. | 6 | 3 |
| 372 | 133.23 | temperature | 30 | 90 | < th | dose independent | sin | 9 | NA |
| 388 | 134.42 | temperature | 30 | 10 | > th | dose dependent | sin | 10 | NA |
| 418 | 135.04 | wind | 9 | 4320 | > th | dose dependent | rect. | 3 | 11 |
| 424 | 135.06 | wind | 1 | 270 | < th | dose independent | rect. | 17 | 5 |
| 456 | 135.31 | wind | 1 | 270 | < th | dose dependent | rect. | 17 | 5 |
| 462 | 135.36 | wind | 9 | 4320 | < th | dose independent | rect. | 3 | 11 |
| 470 | 135.49 | wind | 9 | 4320 | > th | dose independent | rect. | 3 | 11 |
| 472 | 135.49 | wind | 9 | 4320 | < th | dose independent | rect. | 23 | 15 |
| 480 | 135.53 | wind | 9 | 4320 | > th | dose independent | rect. | 20 | 18 |
| 517 | 135.62 | wind | 9 | 4320 | < th | dose independent | rect. | 12 | 2 |
| 528 | 135.67 | wind | 9 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 533 | 135.70 | wind | 1 | 90 | < th | dose independent | rect. | 2 | 1 |
| 552 | 135.71 | wind | 9 | 4320 | > th | dose dependent | sin | 4 | NA |
| 569 | 135.77 | wind | 9 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 588 | 135.80 | wind | 9 | 4320 | < th | dose independent | sin | 4 | NA |
| 614 | 135.85 | humidity | 80 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 647 | 135.95 | humidity | 90 | 4320 | < th | dose dependent | rect. | 24 | 2 |
| 654 | 135.97 | wind | 9 | 4320 | > th | dose independent | sin | 4 | NA |
| 657 | 135.97 | wind | 9 | 4320 | < th | dose independent | rect. | 19 | 19 |
| 681 | 136.06 | wind | 9 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 687 | 136.07 | wind | 1 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 694 | 136.09 | humidity | 80 | 4320 | < th | dose dependent | rect. | 21 | 4 |
| 702 | 136.13 | wind | 1 | 30 | < th | dose dependent | rect. | 17 | 5 |
| 703 | 136.13 | humidity | 90 | 4320 | < th | dose dependent | rect. | 23 | 5 |
| 706 | 136.14 | humidity | 70 | 90 | < th | dose independent | rect. | 6 | 3 |
| 722 | 136.16 | wind | 1 | 30 | < th | dose independent | rect. | 17 | 5 |
| 727 | 136.16 | wind | 1 | 1440 | < th | dose dependent | rect. | 14 | 7 |
| 749 | 136.23 | wind | 1 | 10 | < th | dose independent | rect. | 21 | 1 |
| 751 | 136.23 | wind | 1 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 760 | 136.23 | wind | 1 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 786 | 136.29 | wind | 1 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 829 | 136.35 | wind | 1 | 4320 | < th | dose dependent | rect. | 16 | 2 |
| 923 | 136.47 | wind | 9 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 948 | 136.50 | wind | 9 | 4320 | < th | dose independent | rect. | 15 | 23 |
| 980 | 136.55 | humidity | 80 | 270 | > th | dose independent | rect. | 22 | 8 |
| 998 | 136.59 | wind | 1 | 4320 | > th | dose independent | rect. | 15 | 7 |