BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0421000 Os03g0421000|AK073684
(436 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02890.1 | chr3:640828-645303 FORWARD LENGTH=995 78 8e-15
AT1G43770.2 | chr1:16548509-16550257 FORWARD LENGTH=432 77 2e-14
AT5G16680.1 | chr5:5467534-5472956 REVERSE LENGTH=1312 62 5e-10
AT5G61120.1 | chr5:24582486-24585030 REVERSE LENGTH=427 54 2e-07
>AT3G02890.1 | chr3:640828-645303 FORWARD LENGTH=995
Length = 994
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 4/138 (2%)
Query: 286 PPPEICWTGCFLVSNGSNCNP--ADFKAYCPSKVSSKVLNVIKSMPSIIELDILPRMDEW 343
P PE W G V N + + +AY + S KV+ V+K P + L+ +PR+ W
Sbjct: 695 PKPEYIWQGDLEVQKSRNLSAMHSGIQAYLSTLASPKVVEVVKQFPEKVTLNEVPRLSSW 754
Query: 344 PKSFEINPPVYEDIGLFFFSTELDRNGKSQSHVMETSC--NFVMRAYINNIKLLIYSSEV 401
P F+ + + LFFF+ +++ K+ +++ + ++ + ++LLI++S
Sbjct: 755 PAQFQDTGAKEQHVALFFFAKDIESYEKNYKPLVDNMIQKDLALKGNLEGVELLIFASNQ 814
Query: 402 LPPDSQWIDGESYLWGVF 419
LP D Q + +LWGVF
Sbjct: 815 LPQDCQRWNMLFFLWGVF 832
>AT1G43770.2 | chr1:16548509-16550257 FORWARD LENGTH=432
Length = 431
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 278 SSVEYARQPPPEICWTGCFLVSNGSNCNPADFKAYCPSKVSSKVLNVIKSMPSIIELDIL 337
+S Y QP W G V G++C A+ S KV S+ + +IL
Sbjct: 279 TSRNYRAQPIKIPIWRGLMSVKGGNSCTMDGIVAHVSSLACPKVHETASSLKGRLSAEIL 338
Query: 338 PRMDEWPKSFEIN-PPVYEDIGLFFF-STELDRNGKSQSHVMETSCN-FVMRAYINNIKL 394
PR++ WPK+F N P E + LFFF S+E + S V + N MR +N+ +L
Sbjct: 339 PRLEVWPKTFLKNGGPKDESVALFFFPSSESNDEKVFDSLVDKMKKNDSAMRCVLNDAEL 398
Query: 395 LIYSSEVLPPDSQWIDGESYLWGVF 419
L+++S +LP DS + + YLWGVF
Sbjct: 399 LLFTSYMLPKDSWTFNSKYYLWGVF 423
>AT5G16680.1 | chr5:5467534-5472956 REVERSE LENGTH=1312
Length = 1311
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 10/158 (6%)
Query: 286 PPPEICWTGCFLVSNGSNCNP--ADFKAYCPSKVSSKVLNVIKSMPSIIELDILPRMDEW 343
P E W G V N + + +A+ + S +V V+ P L+ +PR W
Sbjct: 832 PDHEFIWQGDLEVRKIINQSAMHSGIQAHLSTLASPRVAEVVNKFPETFSLNEVPRKSTW 891
Query: 344 PKSFEINPPVYEDIGLFFFSTEL---DRNGKSQSHVMETSCNFVMRAYINNIKLLIYSSE 400
P FE I LFFF+ + +RN K M + ++ ++N+ LLI++S
Sbjct: 892 PTQFEKLGTKEAHIALFFFAKDTESYERNYKPLVDNM-IKNDLALKGNLDNVDLLIFASN 950
Query: 401 VLPPDSQWIDGESYLWGVFVDPK----RRHKSMPFGSI 434
LP + Q + +LWGVF K +++ S+P ++
Sbjct: 951 QLPSNCQRWNMLYFLWGVFQGRKETNPQKNTSLPTSNV 988
>AT5G61120.1 | chr5:24582486-24585030 REVERSE LENGTH=427
Length = 426
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 18/201 (8%)
Query: 246 REKSGSNVTG----TDIGRGSEMSPDNDIGMLVVINSSVEYA-RQPPPEICWTGCFLVSN 300
R+ S + G + +G G++ N+I ++ ++ +P W G + S
Sbjct: 185 RQASKAQAVGEGSKSKVGDGAKYHDSNEICRSILSEKLLQLLPYRPALHPIWKGRIVDSA 244
Query: 301 GSNCNPADFKAYCPSKVSSKVLNVIKSMPSIIELDILPRMDEWPKSFEINPPVYEDIGLF 360
+ +F A SKV K + K++P ++++ ++P + F P D+ ++
Sbjct: 245 TPSEFNGEFLAQPASKVRGKAYILSKAIPVLLKVKLVPIGNLLSGLFMNRKPGLSDVEMY 304
Query: 361 FFSTELDRNGK----SQSHVMETSC--NFVMRAYINNIKLLIYSSEVLPPDSQWI----- 409
F D+N K + H+ E N +M+ IN LLI+SS++L SQ I
Sbjct: 305 IFPD--DKNTKRFTAERDHIFEAMRIRNAMMKFNINGTPLLIFSSKLLDKSSQIIIKMQK 362
Query: 410 DGESYLWGVFVDPKRRHKSMP 430
++LWG+F+ K+ +P
Sbjct: 363 KTNNFLWGIFLLTKKSLALLP 383
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,322,177
Number of extensions: 458966
Number of successful extensions: 1376
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1378
Number of HSP's successfully gapped: 4
Length of query: 436
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 334
Effective length of database: 8,310,137
Effective search space: 2775585758
Effective search space used: 2775585758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)