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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0213600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.05 (0.0326) R2 : 0.681
β1 : 4.42 (0.17) R2dD : 1.71 R2D : -0.671
β2 : 0.696 (0.0622) R2dC : 0.0872 R2C : -0.175
β3 : -1.63 (0.0946) R2dE : 0.278 R2E : -0.406
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.93 (0.496) R2dD*E : 0.501 R2D*E : -0.884
γ1 : 1.14 (0.0685) R2dN8 : 0.436 R2N8 : -0.325
σ : 0.465
deviance : 99.7
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_____
C
peak time of C : 3.3
E
wheather : temperature
threshold : 18.93
memory length : 4618
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.41 0.459 5.06 4.39 0.713 -1.64 -1.18 6.97 1.14 3.28 19.11 4529 -- --
125.23 0.521 5.22 3.34 0.752 -2.15 -1.09 -- 1.15 3.15 8.898 15441 -- --
99.7 0.465 5.05 4.42 0.696 -1.63 -- 6.93 1.14 3.3 18.93 4618 -- --
124.4 0.519 5.26 3.06 0.734 -2.16 -- -- 0.959 3.24 9.45 10517 -- --
126.51 0.524 5.05 4.47 -- -1.59 -- 6.99 1.16 -- 18.83 4709 -- --
197.14 0.658 5.42 1.74 0.679 -- -1.21 -- 0.268 3.28 -- -- -- --
201.79 0.665 5.42 1.76 0.677 -- -- -- 0.275 3.44 -- -- -- --
154.94 0.58 5.27 3.05 -- -2.09 -- -- 0.956 -- 8.717 10504 -- --
271.94 0.772 5.43 -- 0.439 -1.05 -- -- 0.202 4.18 9.45 10517 -- --
227.51 0.705 5.42 1.79 -- -- -- -- 0.293 -- -- -- -- --
283.52 0.788 5.46 -- 0.712 -- -- -- 0.0785 3.43 -- -- -- --
279.9 0.782 5.42 -- -- -1.45 -- -- 0.258 -- 9.45 10517 -- --
311.99 0.824 5.46 -- -- -- -- -- 0.094 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 91.74 humidity 90 43200 < th dose independent rect. 19 1
2 91.80 radiation 1 43200 < th dose independent rect. 18 11
3 91.91 temperature 25 4320 > th dose independent rect. 11 1
4 91.96 radiation 1 43200 < th dose independent rect. 18 7
5 91.98 radiation 1 43200 < th dose independent rect. 18 5
10 92.03 radiation 1 43200 < th dose independent rect. 18 2
14 92.42 radiation 1 43200 > th dose independent rect. 18 1
25 93.07 radiation 1 43200 < th dose dependent rect. 4 1
26 93.13 humidity 80 43200 > th dose dependent rect. 18 1
29 93.32 atmosphere 1010 43200 > th dose independent rect. 6 1
30 93.37 atmosphere 1010 43200 < th dose independent rect. 2 5
33 93.42 atmosphere 1010 43200 > th dose independent rect. 2 5
35 93.43 atmosphere 1010 43200 > th dose independent rect. 24 12
39 93.45 atmosphere 1010 43200 < th dose independent rect. 10 1
54 93.52 atmosphere 1010 43200 < th dose independent rect. 5 2
65 93.55 atmosphere 1010 43200 < th dose independent rect. 24 12
66 93.55 radiation 1 43200 < th dose dependent rect. 18 11
72 93.58 atmosphere 1010 43200 < th dose independent rect. 2 2
83 93.61 atmosphere 1010 43200 > th dose independent rect. 9 3
97 93.64 atmosphere 1010 43200 > th dose independent rect. 3 1
99 93.64 radiation 1 43200 < th dose dependent rect. 21 8
161 93.80 atmosphere 1010 43200 > th dose independent sin 7 NA
165 93.81 humidity 80 43200 < th dose independent rect. 16 1
184 93.84 temperature 25 4320 > th dose independent rect. 10 15
211 93.92 atmosphere 1010 43200 < th dose independent sin 7 NA
297 94.12 temperature 25 4320 < th dose independent rect. 11 1
308 94.14 temperature 25 4320 < th dose independent rect. 10 16
399 94.25 atmosphere 1000 43200 > th dose dependent rect. 7 1
532 94.41 atmosphere 1010 43200 > th dose independent no NA NA
573 94.45 atmosphere 1010 43200 > th dose independent rect. 8 23
609 94.48 atmosphere 1010 43200 < th dose independent rect. 8 23
616 94.50 atmosphere 1010 43200 < th dose independent no NA NA
660 94.55 temperature 25 4320 > th dose independent rect. 10 3
665 94.55 atmosphere 1010 43200 < th dose independent rect. 4 23
870 94.81 humidity 80 43200 < th dose independent rect. 15 3
896 94.87 humidity 80 43200 > th dose independent rect. 16 2
937 94.93 atmosphere 1010 43200 > th dose independent rect. 18 1
944 94.94 atmosphere 1015 43200 < th dose dependent rect. 7 1