BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0213600 Os03g0213600|AK100407
(1044 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0213600 Conserved hypothetical protein 1963 0.0
Os03g0421000 Zinc finger, FYVE/PHD-type domain containing p... 91 7e-18
Os11g0292000 Zinc finger, FYVE/PHD-type domain containing p... 78 3e-14
Os11g0160100 Zinc finger, FYVE/PHD-type domain containing p... 73 1e-12
Os12g0161500 Hypothetical protein 70 6e-12
>Os03g0213600 Conserved hypothetical protein
Length = 1044
Score = 1963 bits (5085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 963/1044 (92%), Positives = 963/1044 (92%)
Query: 1 MAHAARPLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKDRACATCGDKID 60
MAHAARPLGG MKDRACATCGDKID
Sbjct: 1 MAHAARPLGGRARNPSPGPARPPPPFAAADAAAAADLRDAPRRVARMKDRACATCGDKID 60
Query: 61 SGNVIRCQCKKSPEHAKHEIHHTNDAMLEAKGFAKPNSSNKYGMHKSSGGTYSKPDARVK 120
SGNVIRCQCKKSPEHAKHEIHHTNDAMLEAKGFAKPNSSNKYGMHKSSGGTYSKPDARVK
Sbjct: 61 SGNVIRCQCKKSPEHAKHEIHHTNDAMLEAKGFAKPNSSNKYGMHKSSGGTYSKPDARVK 120
Query: 121 IIPAEEITYVRHGKLCGKTVGSDGLQKXXXXXXXXXXXXXXKVSLVTPTVVNQRPTPPVS 180
IIPAEEITYVRHGKLCGKTVGSDGLQK KVSLVTPTVVNQRPTPPVS
Sbjct: 121 IIPAEEITYVRHGKLCGKTVGSDGLQKRQRRRSVTPPPSSRKVSLVTPTVVNQRPTPPVS 180
Query: 181 PAASRISPNRPGTAKNVHSVVTSCISPNLTGKAENGHSLATSGISPNCPGAVKKIHSLAT 240
PAASRISPNRPGTAKNVHSVVTSCISPNLTGKAENGHSLATSGISPNCPGAVKKIHSLAT
Sbjct: 181 PAASRISPNRPGTAKNVHSVVTSCISPNLTGKAENGHSLATSGISPNCPGAVKKIHSLAT 240
Query: 241 SPISPNWPGAVKKIHSLATSPISPMWPETAGNGHSLVGGYITNSFTTQIAYLSQRPSPFC 300
SPISPNWPGAVKKIHSLATSPISPMWPETAGNGHSLVGGYITNSFTTQIAYLSQRPSPFC
Sbjct: 241 SPISPNWPGAVKKIHSLATSPISPMWPETAGNGHSLVGGYITNSFTTQIAYLSQRPSPFC 300
Query: 301 RAVLSQPSGTPLGTDATAPKNLSRSGNREAYVKSCSSRTRTFSSAHAHSTVVPPGTNAEP 360
RAVLSQPSGTPLGTDATAPKNLSRSGNREAYVKSCSSRTRTFSSAHAHSTVVPPGTNAEP
Sbjct: 301 RAVLSQPSGTPLGTDATAPKNLSRSGNREAYVKSCSSRTRTFSSAHAHSTVVPPGTNAEP 360
Query: 361 SAESFCAPGNEKSSPMSCKLGTLQCQGTRTAVAPSVQKKLTMEPALPSPKSVLSEKSNEA 420
SAESFCAPGNEKSSPMSCKLGTLQCQGTRTAVAPSVQKKLTMEPALPSPKSVLSEKSNEA
Sbjct: 361 SAESFCAPGNEKSSPMSCKLGTLQCQGTRTAVAPSVQKKLTMEPALPSPKSVLSEKSNEA 420
Query: 421 YPDTAPRPSSRPNLFDTKCKVGXXXXXXXXXXXXXXXXXXHARCVEPPDDFEAVPSTKSH 480
YPDTAPRPSSRPNLFDTKCKVG HARCVEPPDDFEAVPSTKSH
Sbjct: 421 YPDTAPRPSSRPNLFDTKCKVGSPQSETIIPPSQSPQSTSHARCVEPPDDFEAVPSTKSH 480
Query: 481 IITEKQMNQEAPINCNVSSGIPVILHTKLHKKHYQPEACWKGKFEVTGELTHICDGLEAH 540
IITEKQMNQEAPINCNVSSGIPVILHTKLHKKHYQPEACWKGKFEVTGELTHICDGLEAH
Sbjct: 481 IITEKQMNQEAPINCNVSSGIPVILHTKLHKKHYQPEACWKGKFEVTGELTHICDGLEAH 540
Query: 541 FPFEISAQVYEASKQMPEILKLEARPLSHLWPKTFKMKPPEGQDIGLCFISSLQRPNGSS 600
FPFEISAQVYEASKQMPEILKLEARPLSHLWPKTFKMKPPEGQDIGLCFISSLQRPNGSS
Sbjct: 541 FPFEISAQVYEASKQMPEILKLEARPLSHLWPKTFKMKPPEGQDIGLCFISSLQRPNGSS 600
Query: 601 DHLLKNISSHIGLRTKIGATELLIFSSKLLTQEYQRKCDKFYFWGVFRALHRSYNQTSMS 660
DHLLKNISSHIGLRTKIGATELLIFSSKLLTQEYQRKCDKFYFWGVFRALHRSYNQTSMS
Sbjct: 601 DHLLKNISSHIGLRTKIGATELLIFSSKLLTQEYQRKCDKFYFWGVFRALHRSYNQTSMS 660
Query: 661 FDATGCKEIERHKNKETGKILETQDKKTEKEKCGEIGNKLDSAVSRERDRINECMRMLTP 720
FDATGCKEIERHKNKETGKILETQDKKTEKEKCGEIGNKLDSAVSRERDRINECMRMLTP
Sbjct: 661 FDATGCKEIERHKNKETGKILETQDKKTEKEKCGEIGNKLDSAVSRERDRINECMRMLTP 720
Query: 721 DPNAAASSSDFTCQSAPRVPAGSDLVLDTPPGFPHDDPPGLTKAHCLLHTGETTEPYIDS 780
DPNAAASSSDFTCQSAPRVPAGSDLVLDTPPGFPHDDPPGLTKAHCLLHTGETTEPYIDS
Sbjct: 721 DPNAAASSSDFTCQSAPRVPAGSDLVLDTPPGFPHDDPPGLTKAHCLLHTGETTEPYIDS 780
Query: 781 SPSLNLGVPPGLSLDIPPGFMKAHYLPHTGETTESHINPSHSHSLSWDTPLGFSLDVPPG 840
SPSLNLGVPPGLSLDIPPGFMKAHYLPHTGETTESHINPSHSHSLSWDTPLGFSLDVPPG
Sbjct: 781 SPSLNLGVPPGLSLDIPPGFMKAHYLPHTGETTESHINPSHSHSLSWDTPLGFSLDVPPG 840
Query: 841 FTKAHRLPIVSTAGSETVVSEKKPLIKFTLNVPRVAQTEAIPGFIKLLAVKQEPGLPAIC 900
FTKAHRLPIVSTAGSETVVSEKKPLIKFTLNVPRVAQTEAIPGFIKLLAVKQEPGLPAIC
Sbjct: 841 FTKAHRLPIVSTAGSETVVSEKKPLIKFTLNVPRVAQTEAIPGFIKLLAVKQEPGLPAIC 900
Query: 901 MATEKASTGKEDEIKSKQDEVVTERDESSEERLFPKTRLLSDILXXXXXXXXXXXXXPKP 960
MATEKASTGKEDEIKSKQDEVVTERDESSEERLFPKTRLLSDIL PKP
Sbjct: 901 MATEKASTGKEDEIKSKQDEVVTERDESSEERLFPKTRLLSDILSSSAASNANTNASPKP 960
Query: 961 TSKFHDAPDNQIQDRKRDHPESPEPSPADTLKRLRVNGRIALNRVMDRRTLSSQPISREG 1020
TSKFHDAPDNQIQDRKRDHPESPEPSPADTLKRLRVNGRIALNRVMDRRTLSSQPISREG
Sbjct: 961 TSKFHDAPDNQIQDRKRDHPESPEPSPADTLKRLRVNGRIALNRVMDRRTLSSQPISREG 1020
Query: 1021 LVDIQVSGPTVLTRSKCCSWQHFR 1044
LVDIQVSGPTVLTRSKCCSWQHFR
Sbjct: 1021 LVDIQVSGPTVLTRSKCCSWQHFR 1044
>Os03g0421000 Zinc finger, FYVE/PHD-type domain containing protein
Length = 436
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 1/149 (0%)
Query: 500 GIPVILHTKL-HKKHYQPEACWKGKFEVTGELTHICDGLEAHFPFEISAQVYEASKQMPE 558
G+ V++++ + + + PE CW G F V+ +A+ P ++S++V K MP
Sbjct: 271 GMLVVINSSVEYARQPPPEICWTGCFLVSNGSNCNPADFKAYCPSKVSSKVLNVIKSMPS 330
Query: 559 ILKLEARPLSHLWPKTFKMKPPEGQDIGLCFISSLQRPNGSSDHLLKNISSHIGLRTKIG 618
I++L+ P WPK+F++ PP +DIGL F S+ NG S + S + +R I
Sbjct: 331 IIELDILPRMDEWPKSFEINPPVYEDIGLFFFSTELDRNGKSQSHVMETSCNFVMRAYIN 390
Query: 619 ATELLIFSSKLLTQEYQRKCDKFYFWGVF 647
+LLI+SS++L + Q + Y WGVF
Sbjct: 391 NIKLLIYSSEVLPPDSQWIDGESYLWGVF 419
>Os11g0292000 Zinc finger, FYVE/PHD-type domain containing protein
Length = 928
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 10/143 (6%)
Query: 520 WKGKFEVTGELTH--ICDGLEAHFPFEISAQVYEASKQMPEILKLEARPLSHLWPKTFKM 577
W+G FE++ + +C+GL+AH S +V E +K+ P ++LE P +LWP F
Sbjct: 514 WRGGFELSRTVRSPVLCEGLQAHLSCFASPKVLEVAKKFPSNVQLEELPRQNLWPPQFHD 573
Query: 578 KPPEGQDIGLCFISSLQRPNGSSD----HLLKN-ISSHIGLRTKIGATELLIFSSKLLTQ 632
P I L F + R S + L++N + + LR I ELLIF+S L
Sbjct: 574 NGPTIDSIALFFFA---RDTESYEIHYRKLVENMLKDDLALRGNIETAELLIFASNTLPN 630
Query: 633 EYQRKCDKFYFWGVFRALHRSYN 655
+QR + WGVFR + N
Sbjct: 631 NFQRWNMFHFLWGVFRVRRKDAN 653
>Os11g0160100 Zinc finger, FYVE/PHD-type domain containing protein
Length = 688
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 539 AHFPFEISAQVYEASKQMPEILKLEARPLSHLWPKTF-KMKPPEGQDIGLCFISSLQRPN 597
AHF + +V E S +P+I+K+ P WPK++ K P + IGL F S R N
Sbjct: 465 AHFSNKACKKVCELSMSLPQIMKVTELPKLKAWPKSWEKASVPSAESIGLFFFSQNTRSN 524
Query: 598 GSSDHLLKNISSH-IGLRTKIGATELLIFSSKLLTQEYQRKCDKFYFWGVFR 648
D L+K++ + I L T + +LL+F S +L EY+ K Y WGVF+
Sbjct: 525 KEFDDLVKHVIDYDIVLETDVSFAKLLVFPSVVLPAEYRVFQGKHYLWGVFK 576
>Os12g0161500 Hypothetical protein
Length = 530
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 10/176 (5%)
Query: 480 HIITEKQMNQEAPINCNVSSGIPVILHTKLHKKHY----QP--EACWKGKFEVTGELTHI 533
++ E + + P++ S+ + + + + K+ + QP E W G F++ G +I
Sbjct: 208 NVDEEDDYDDKNPMDIKDSTKVAMPIAAESIKRQFYHCIQPIDEPIWSGIFKIGGN-DYI 266
Query: 534 CDGLEAHFPFEISAQVYEASKQMPEILKLEARPLSHLWPKTFKMKPPEGQDIGLCFISSL 593
AH + +V++ S +P I+++ S +WPK+ + P IGL F
Sbjct: 267 P--FSAHLSTKSCKKVWDLSVSIPSIVQVTKLSRSVVWPKSLEASSPTDDSIGLYFFPPK 324
Query: 594 QRPNGSSDHLLKNI-SSHIGLRTKIGATELLIFSSKLLTQEYQRKCDKFYFWGVFR 648
R + D L+K I + L IG ++L+F S LL ++Y+ K Y WGVF+
Sbjct: 325 MRLDKGMDQLVKEIVEKDMALSAVIGEAQMLMFPSTLLPEKYRTFQGKHYLWGVFK 380
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 37,636,736
Number of extensions: 1730606
Number of successful extensions: 4461
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 4445
Number of HSP's successfully gapped: 5
Length of query: 1044
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 933
Effective length of database: 11,240,047
Effective search space: 10486963851
Effective search space used: 10486963851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 161 (66.6 bits)