BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0213600 Os03g0213600|AK100407
         (1044 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02890.1  | chr3:640828-645303 FORWARD LENGTH=995               74   5e-13
AT1G43770.2  | chr1:16548509-16550257 FORWARD LENGTH=432           64   6e-10
AT5G16680.1  | chr5:5467534-5472956 REVERSE LENGTH=1312            60   4e-09

>AT3G02890.1 | chr3:640828-645303 FORWARD LENGTH=995
          Length = 994

 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 4/139 (2%)

Query: 515 QPEACWKGKFEV--TGELTHICDGLEAHFPFEISAQVYEASKQMPEILKLEARPLSHLWP 572
           +PE  W+G  EV  +  L+ +  G++A+     S +V E  KQ PE + L   P    WP
Sbjct: 696 KPEYIWQGDLEVQKSRNLSAMHSGIQAYLSTLASPKVVEVVKQFPEKVTLNEVPRLSSWP 755

Query: 573 KTFKMKPPEGQDIGLCFIS-SLQRPNGSSDHLLKN-ISSHIGLRTKIGATELLIFSSKLL 630
             F+    + Q + L F +  ++    +   L+ N I   + L+  +   ELLIF+S  L
Sbjct: 756 AQFQDTGAKEQHVALFFFAKDIESYEKNYKPLVDNMIQKDLALKGNLEGVELLIFASNQL 815

Query: 631 TQEYQRKCDKFYFWGVFRA 649
            Q+ QR    F+ WGVFR 
Sbjct: 816 PQDCQRWNMLFFLWGVFRG 834



>AT1G43770.2 | chr1:16548509-16550257 FORWARD LENGTH=432
          Length = 431

 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 494 NCNVS-SGIPVILHTKLHKKHYQPEACWKGKFEVTGELTHICDGLEAHFPFEISAQVYEA 552
           +C V+ S +P+ L ++ ++        W+G   V G  +   DG+ AH       +V+E 
Sbjct: 266 SCRVAESNMPLTLTSRNYRAQPIKIPIWRGLMSVKGGNSCTMDGIVAHVSSLACPKVHET 325

Query: 553 SKQMPEILKLEARPLSHLWPKTF-KMKPPEGQDIGLCFI-SSLQRPNGSSDHLLKNISSH 610
           +  +   L  E  P   +WPKTF K   P+ + + L F  SS        D L+  +  +
Sbjct: 326 ASSLKGRLSAEILPRLEVWPKTFLKNGGPKDESVALFFFPSSESNDEKVFDSLVDKMKKN 385

Query: 611 -IGLRTKIGATELLIFSSKLLTQEYQRKCDKFYFWGVFR 648
              +R  +   ELL+F+S +L ++      K+Y WGVF+
Sbjct: 386 DSAMRCVLNDAELLLFTSYMLPKDSWTFNSKYYLWGVFK 424



>AT5G16680.1 | chr5:5467534-5472956 REVERSE LENGTH=1312
          Length = 1311

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 13/167 (7%)

Query: 502 PVILHTKLHKKHYQPEACWKGKFEVTGELTH--ICDGLEAHFPFEISAQVYEASKQMPEI 559
           PV+L +     H   E  W+G  EV   +    +  G++AH     S +V E   + PE 
Sbjct: 823 PVMLRSSAIPDH---EFIWQGDLEVRKIINQSAMHSGIQAHLSTLASPRVAEVVNKFPET 879

Query: 560 LKLEARPLSHLWPKTFKMKPPEGQDIGLCFIS----SLQRPNG-SSDHLLKNISSHIGLR 614
             L   P    WP  F+    +   I L F +    S +R      D+++KN    + L+
Sbjct: 880 FSLNEVPRKSTWPTQFEKLGTKEAHIALFFFAKDTESYERNYKPLVDNMIKN---DLALK 936

Query: 615 TKIGATELLIFSSKLLTQEYQRKCDKFYFWGVFRALHRSYNQTSMSF 661
             +   +LLIF+S  L    QR    ++ WGVF+    +  Q + S 
Sbjct: 937 GNLDNVDLLIFASNQLPSNCQRWNMLYFLWGVFQGRKETNPQKNTSL 983



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.130    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 23,287,221
Number of extensions: 1052404
Number of successful extensions: 2482
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2484
Number of HSP's successfully gapped: 3
Length of query: 1044
Length of database: 11,106,569
Length adjustment: 109
Effective length of query: 935
Effective length of database: 8,118,225
Effective search space: 7590540375
Effective search space used: 7590540375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 117 (49.7 bits)