BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0286700 Os11g0286700|Os11g0286700
         (70 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0286700  Similar to Beta-amyrin synthase                     114   2e-26
Os11g0286800  Terpene synthase family protein                      82   1e-16
Os06g0483200  Similar to Beta-amyrin synthase                      69   9e-13
Os11g0562100  Terpene synthase family protein                      64   2e-11
Os02g0139700  Similar to Cycloartenol synthase                     64   3e-11
Os11g0285000  Similar to Beta-amyrin synthase                      63   4e-11

>Os11g0286700 Similar to Beta-amyrin synthase
          Length = 70

 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/70 (80%), Positives = 56/70 (80%)

Query: 1  MWKLKIGEGAGNPLLRSPNGFLGRETWEFDPDAGTPEERAEVEXXXXXXXXXXXXXXECD 60
          MWKLKIGEGAGNPLLRSPNGFLGRETWEFDPDAGTPEERAEVE              ECD
Sbjct: 1  MWKLKIGEGAGNPLLRSPNGFLGRETWEFDPDAGTPEERAEVERLRRDFTRNRFTRRECD 60

Query: 61 ICFACDSFTQ 70
          ICFACDSFTQ
Sbjct: 61 ICFACDSFTQ 70



>Os11g0286800 Terpene synthase family protein
          Length = 756

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/43 (81%), Positives = 37/43 (86%)

Query: 1  MWKLKIGEGAGNPLLRSPNGFLGRETWEFDPDAGTPEERAEVE 43
          MWKLK GEGA NPLLRS NGFLGRETWEFDP+ G+PEE A VE
Sbjct: 1  MWKLKFGEGASNPLLRSSNGFLGRETWEFDPNGGSPEEHAVVE 43



>Os06g0483200 Similar to Beta-amyrin synthase
          Length = 193

 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 36/43 (83%), Gaps = 1/43 (2%)

Query: 1  MWKLKIGEGAGNPLLRSPNGFLGRETWEFDPDAGTPEERAEVE 43
          MW+LK+ EG G P LRS NGFLGR  WEFDP+AGTPEERAEVE
Sbjct: 1  MWRLKVAEG-GAPGLRSCNGFLGRAVWEFDPNAGTPEERAEVE 42



>Os11g0562100 Terpene synthase family protein
          Length = 762

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 33/43 (76%), Gaps = 1/43 (2%)

Query: 1  MWKLKIGEGAGNPLLRSPNGFLGRETWEFDPDAGTPEERAEVE 43
          MW+LK+ +G G  LLRS NGF GR  WEFDPD GTPE+RA VE
Sbjct: 1  MWRLKVAQGGG-ALLRSTNGFAGRAVWEFDPDHGTPEDRANVE 42



>Os02g0139700 Similar to Cycloartenol synthase
          Length = 759

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 1  MWKLKIGEGAGNPLLRSPNGFLGRETWEFDPDAGTPEERAEVE 43
          MW+L++ EG G+P LR+ NG +GR+ WEFDP AG P+E A VE
Sbjct: 1  MWRLRVAEGGGDPWLRTKNGHVGRQVWEFDPAAGDPDELAAVE 43



>Os11g0285000 Similar to Beta-amyrin synthase
          Length = 760

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 33/47 (70%), Gaps = 5/47 (10%)

Query: 1  MWKLKIGE-----GAGNPLLRSPNGFLGRETWEFDPDAGTPEERAEV 42
          MW+LKI          +PLL + NGFLGR  WEFDPDAGTPEERAEV
Sbjct: 1  MWRLKIAAESGGGSGSSPLLHTGNGFLGRAVWEFDPDAGTPEERAEV 47



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.139    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,485,071
Number of extensions: 80285
Number of successful extensions: 136
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 6
Length of query: 70
Length of database: 17,035,801
Length adjustment: 42
Effective length of query: 28
Effective length of database: 14,842,813
Effective search space: 415598764
Effective search space used: 415598764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)