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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0286700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-amyrin synthase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.55 (0.0393) R2 : 0.435
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.77 (0.146) R2dC : 0.425 R2C : -0.473
β3 : 2.72 (0.149) R2dE : 0.896 R2E : 0.00121
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.138 (0.0831) R2dN8 : 0.00463 R2N8 : 0.00861
σ : 0.737
deviance : 250.5
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_____
C
peak time of C : 8.88
E
wheather : temperature
threshold : -7.855
memory length : 300
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14
open length of G : 14.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
222.97 0.702 4.56 -0.609 1.65 2.71 3.42 2.04 0.0535 8.04 7.711 312 13.8 15
226.41 0.701 4.57 -0.809 1.75 2.8 2.44 -- 0.0511 7.92 6.315 328 13.5 15
250.28 0.737 4.55 -0.599 1.86 2.61 -- 0.864 0.124 7.71 4.676 338 13.1 15.4
240.98 0.723 4.57 -0.592 1.87 2.75 -- -- 0.054 8.39 -1.657 332 13.6 14.6
271.08 0.767 4.62 -0.718 -- 2.32 -- 1.78 0.0541 -- -2.114 914 12.8 15.8
302.76 0.816 4.58 -0.416 1.49 -- 0.602 -- 0.221 2.95 -- -- -- --
303.9 0.816 4.58 -0.429 1.49 -- -- -- 0.218 2.85 -- -- -- --
270.85 0.767 4.58 -0.596 -- 2.25 -- -- 0.158 -- 5.808 894 13.5 11.7
250.5 0.737 4.55 -- 1.77 2.72 -- -- 0.138 8.88 -7.855 300 14 14.7
432.5 0.972 4.57 -0.366 -- -- -- -- 0.256 -- -- -- -- --
308.76 0.822 4.57 -- 1.48 -- -- -- 0.266 2.85 -- -- -- --
282.76 0.783 4.6 -- -- 2.09 -- -- 0.155 -- 6.004 899 13.7 11.3
436.03 0.975 4.56 -- -- -- -- -- 0.297 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 227.65 temperature 10.0 270 > th dose dependent rect. 14 15
2 227.69 humidity 50.0 270 > th dose dependent rect. 17 7
8 228.98 radiation 1.0 270 < th dose dependent rect. 8 17
24 230.38 radiation 1.0 270 < th dose dependent rect. 15 10
25 230.40 radiation 1.0 270 < th dose independent rect. 8 17
29 230.71 humidity 50.0 90 > th dose dependent rect. 19 8
39 231.14 humidity 70.0 270 > th dose independent rect. 18 6
45 231.31 wind 7.0 270 < th dose independent rect. 14 15
47 231.39 humidity 70.0 270 > th dose independent rect. 17 8
48 231.40 temperature 15.0 270 > th dose independent rect. 5 10
61 231.81 radiation 1.0 270 < th dose independent rect. 15 10
67 232.10 temperature 30.0 720 < th dose independent rect. 17 8
69 232.32 temperature 30.0 720 < th dose independent rect. 17 16
88 233.27 temperature 30.0 720 < th dose independent sin 12 NA
94 233.59 temperature 15.0 270 > th dose independent rect. 24 19
99 233.89 temperature 25.0 720 > th dose dependent rect. 16 3
103 234.24 precipitation 0.1 270 < th dose independent rect. 24 19
104 234.24 precipitation 0.1 270 < th dose dependent rect. 24 19
105 234.25 wind 7.0 270 < th dose independent rect. 24 19
116 234.97 temperature 15.0 270 > th dose independent rect. 19 5
119 235.03 temperature 30.0 270 < th dose independent rect. 19 5
120 235.03 humidity 50.0 270 > th dose independent rect. 19 5
121 235.03 atmosphere 995.0 270 > th dose independent rect. 19 5
122 235.03 radiation 1.0 270 < th dose independent rect. 19 5
128 235.03 atmosphere 1015.0 270 < th dose independent rect. 24 19
129 235.03 radiation 1.0 270 < th dose dependent rect. 19 5
136 235.13 temperature 25.0 720 > th dose dependent rect. 15 5
138 235.16 wind 9.0 270 < th dose independent rect. 19 5
150 235.44 temperature 15.0 90 > th dose independent rect. 3 16
155 235.66 temperature 30.0 270 < th dose dependent rect. 17 7
158 235.76 precipitation 0.1 270 < th dose independent rect. 5 10
159 235.76 precipitation 0.1 270 < th dose dependent rect. 5 10
163 235.84 temperature 30.0 90 < th dose dependent rect. 19 7
165 235.92 temperature 25.0 720 > th dose dependent rect. 14 9
192 236.47 radiation 40.0 270 < th dose independent rect. 15 14
208 236.69 temperature 25.0 720 > th dose dependent sin 16 NA
216 236.73 temperature 25.0 720 > th dose dependent rect. 14 15
224 236.86 atmosphere 995.0 270 > th dose independent rect. 5 9
225 236.86 atmosphere 1015.0 270 < th dose independent rect. 5 9
228 236.86 temperature 10.0 270 > th dose independent rect. 15 14
235 236.89 wind 9.0 270 < th dose independent rect. 5 9
271 237.26 precipitation 0.1 270 < th dose independent rect. 19 5
273 237.26 precipitation 0.1 270 < th dose dependent rect. 19 5
290 237.55 precipitation 0.1 270 < th dose independent rect. 15 14
291 237.55 precipitation 0.1 270 < th dose dependent rect. 15 14
298 237.66 radiation 1.0 270 < th dose dependent sin 17 NA
311 237.91 radiation 40.0 270 < th dose dependent rect. 24 9
314 237.97 wind 9.0 270 < th dose dependent rect. 19 5
328 238.25 radiation 1.0 270 > th dose independent rect. 5 9
334 238.36 wind 5.0 270 < th dose independent rect. 24 6
368 238.72 precipitation 0.1 90 < th dose independent rect. 3 16
370 238.72 precipitation 0.1 90 < th dose dependent rect. 3 16
396 239.13 wind 1.0 270 > th dose independent rect. 14 14
401 239.24 wind 9.0 90 < th dose independent rect. 3 16
414 239.49 temperature 15.0 90 > th dose independent rect. 19 8
445 239.68 atmosphere 995.0 90 > th dose independent rect. 19 8
452 239.68 atmosphere 1015.0 90 < th dose independent rect. 3 16
467 239.77 wind 9.0 90 < th dose independent rect. 19 8
490 240.14 humidity 50.0 270 > th dose independent rect. 6 18
501 240.24 temperature 30.0 720 < th dose independent rect. 15 16
555 240.70 radiation 1.0 270 < th dose independent rect. 24 11
598 241.04 wind 9.0 270 < th dose dependent rect. 24 6
602 241.07 temperature 15.0 270 > th dose independent rect. 6 18
605 241.08 temperature 15.0 270 > th dose independent rect. 9 15
647 241.22 humidity 70.0 10 > th dose dependent rect. 16 11
650 241.24 radiation 1.0 270 < th dose independent sin 16 NA
685 241.49 temperature 30.0 720 > th dose independent rect. 17 2
706 241.55 radiation 20.0 270 < th dose independent rect. 24 9
799 242.03 wind 9.0 90 < th dose dependent rect. 19 8
818 242.21 atmosphere 1010.0 270 < th dose independent rect. 24 6
825 242.29 temperature 15.0 270 > th dose independent rect. 23 22
832 242.35 precipitation 0.1 90 < th dose independent rect. 19 8
833 242.35 atmosphere 995.0 270 > th dose independent rect. 24 19
834 242.35 precipitation 0.1 90 < th dose dependent rect. 19 8
849 242.46 temperature 15.0 270 > th dose independent rect. 24 6
850 242.46 precipitation 0.1 270 < th dose independent rect. 24 6
853 242.46 precipitation 0.1 270 < th dose dependent rect. 24 6
855 242.47 temperature 30.0 270 < th dose independent rect. 24 6
856 242.47 humidity 50.0 270 > th dose independent rect. 24 6
859 242.47 atmosphere 995.0 270 > th dose independent rect. 24 6
885 242.53 wind 1.0 270 > th dose independent rect. 24 19
905 242.77 wind 9.0 270 < th dose dependent rect. 6 18
925 242.90 temperature 25.0 10 < th dose independent rect. 18 8
935 242.93 radiation 40.0 14400 < th dose dependent rect. 20 7
941 242.98 temperature 10.0 270 > th dose dependent rect. 24 19
951 243.04 temperature 30.0 270 < th dose independent rect. 24 9
959 243.11 wind 9.0 270 < th dose independent rect. 6 18
961 243.12 temperature 30.0 270 < th dose dependent rect. 21 2
984 243.29 atmosphere 995.0 270 > th dose independent rect. 6 18
989 243.32 temperature 10.0 10 > th dose dependent rect. 16 15