BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0286700 Os11g0286700|Os11g0286700
(70 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G78960.1 | chr1:29696722-29701024 FORWARD LENGTH=764 68 1e-12
AT1G66960.1 | chr1:24985155-24989664 REVERSE LENGTH=764 64 1e-11
AT1G78950.1 | chr1:29684558-29688673 REVERSE LENGTH=760 64 2e-11
AT1G78970.2 | chr1:29703414-29707715 FORWARD LENGTH=758 60 2e-10
AT2G07050.1 | chr2:2924629-2930295 FORWARD LENGTH=760 59 4e-10
AT1G78955.1 | chr1:29689153-29694255 REVERSE LENGTH=770 58 8e-10
AT4G15340.1 | chr4:8754670-8760589 REVERSE LENGTH=767 54 1e-08
AT5G36150.1 | chr5:14220737-14225422 REVERSE LENGTH=761 52 5e-08
AT4G15370.1 | chr4:8773786-8779685 REVERSE LENGTH=760 52 7e-08
AT5G42600.1 | chr5:17053566-17057975 FORWARD LENGTH=762 51 1e-07
AT3G29255.1 | chr3:11209586-11213909 FORWARD LENGTH=707 50 2e-07
AT1G78500.1 | chr1:29531646-29535177 FORWARD LENGTH=768 49 5e-07
AT5G48010.2 | chr5:19457001-19461538 FORWARD LENGTH=767 49 7e-07
>AT1G78960.1 | chr1:29696722-29701024 FORWARD LENGTH=764
Length = 763
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1 MWKLKIGEGAG-NPLLRSPNGFLGRETWEFDPDAGTPEERAEVE 43
MWKLKIGEG G +P L S N F+GR+TWEFDP AGTPEERA VE
Sbjct: 1 MWKLKIGEGNGEDPYLFSSNNFVGRQTWEFDPKAGTPEERAAVE 44
>AT1G66960.1 | chr1:24985155-24989664 REVERSE LENGTH=764
Length = 763
Score = 64.3 bits (155), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/44 (65%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1 MWKLKIGEGAG-NPLLRSPNGFLGRETWEFDPDAGTPEERAEVE 43
MW+LK+GEG G +P L S N F+GR+TWEFDP AGT EER VE
Sbjct: 1 MWRLKVGEGKGKDPYLFSSNNFVGRQTWEFDPKAGTREERTAVE 44
>AT1G78950.1 | chr1:29684558-29688673 REVERSE LENGTH=760
Length = 759
Score = 63.5 bits (153), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1 MWKLKIGEGAGN-PLLRSPNGFLGRETWEFDPDAGTPEERAEV 42
MW+LKIGEG G+ P L + N F GR+TWEFDPD G+PEER V
Sbjct: 1 MWRLKIGEGNGDDPYLFTTNNFAGRQTWEFDPDGGSPEERHSV 43
>AT1G78970.2 | chr1:29703414-29707715 FORWARD LENGTH=758
Length = 757
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1 MWKLKIGEGAG-NPLLRSPNGFLGRETWEFDPDAGTPEERAEVE 43
MWKLKIG+G G +P L S N F+GR+TW+FD AG+PEERA VE
Sbjct: 1 MWKLKIGKGNGEDPHLFSSNNFVGRQTWKFDHKAGSPEERAAVE 44
>AT2G07050.1 | chr2:2924629-2930295 FORWARD LENGTH=760
Length = 759
Score = 59.3 bits (142), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1 MWKLKIGEGAGNPLLRSPNGFLGRETWEFDPDAGTPEERAEVE 43
MWKLKI EG G+P LR+ N +GR+ WEFDP+ GTPE+ A VE
Sbjct: 1 MWKLKIAEG-GSPWLRTTNNHVGRQFWEFDPNLGTPEDLAAVE 42
>AT1G78955.1 | chr1:29689153-29694255 REVERSE LENGTH=770
Length = 769
Score = 58.2 bits (139), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1 MWKLKIGEGAGN-PLLRSPNGFLGRETWEFDPDAGTPEERAEVE 43
MWKLKI G P L S N FLGR+TWEFDPDAGT EE A VE
Sbjct: 1 MWKLKIANGNKEEPYLFSTNNFLGRQTWEFDPDAGTVEELAAVE 44
>AT4G15340.1 | chr4:8754670-8760589 REVERSE LENGTH=767
Length = 766
Score = 54.3 bits (129), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 1 MWKLKIGEGAGNPL-LRSPNGFLGRETWEFDPDAGTPEERAEVE 43
MW+L+IG AGN L + N ++GR+ WEFD +AG+P+E AEVE
Sbjct: 1 MWRLRIGAKAGNDTHLFTTNNYVGRQIWEFDANAGSPQELAEVE 44
>AT5G36150.1 | chr5:14220737-14225422 REVERSE LENGTH=761
Length = 760
Score = 52.4 bits (124), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 1 MWKLKIGEGAGN-PLLRSPNGFLGRETWEFDPDAGTPEERAEVE 43
MW+L+IG AG+ P L + N FLGR+ WEFD +AG+P E +EV+
Sbjct: 1 MWRLRIGAKAGDDPHLCTTNNFLGRQIWEFDANAGSPAELSEVD 44
>AT4G15370.1 | chr4:8773786-8779685 REVERSE LENGTH=760
Length = 759
Score = 51.6 bits (122), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 1 MWKLKIGEGAG-NPLLRSPNGFLGRETWEFDPDAGTPEERAEVE 43
MW+L+IG A N L + N ++GR+ WEFD +AG+PEE AEVE
Sbjct: 1 MWRLRIGAKAKDNTHLFTTNNYVGRQIWEFDANAGSPEELAEVE 44
>AT5G42600.1 | chr5:17053566-17057975 FORWARD LENGTH=762
Length = 761
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1 MWKLKIG-EGAGNPLLRSPNGFLGRETWEFDPDAGTPEERAEVE 43
MW+L+IG E +P L + N F GR+ WEFD + G+PEE AEVE
Sbjct: 1 MWRLRIGAEARQDPHLFTTNNFAGRQIWEFDANGGSPEELAEVE 44
>AT3G29255.1 | chr3:11209586-11213909 FORWARD LENGTH=707
Length = 706
Score = 50.1 bits (118), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/43 (55%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 2 WKLKIGEGAGN-PLLRSPNGFLGRETWEFDPDAGTPEERAEVE 43
WKL+IG AG+ P L + N +LGR+ WEFD +A +PEE EVE
Sbjct: 6 WKLRIGAKAGDDPHLCTTNNYLGRQIWEFDTNACSPEELFEVE 48
>AT1G78500.1 | chr1:29531646-29535177 FORWARD LENGTH=768
Length = 767
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1 MWKLKIGEGAGN-PLLRSPNGFLGRETWEFDPDAGTPEERAEVE 43
MW+LKIG G+ L + N + GR+TWEFD DA +PEE AEV+
Sbjct: 1 MWRLKIGAKGGDETHLFTTNNYTGRQTWEFDADACSPEELAEVD 44
>AT5G48010.2 | chr5:19457001-19461538 FORWARD LENGTH=767
Length = 766
Score = 48.5 bits (114), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1 MWKLKIGEGAG-NPLLRSPNGFLGRETWEFDPDAGTPEERAEVE 43
MW+L+ G AG + L + N + GR+ WEFD +AG+P+E AEVE
Sbjct: 1 MWRLRTGPKAGEDTHLFTTNNYAGRQIWEFDANAGSPQEIAEVE 44
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.139 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,529,272
Number of extensions: 46018
Number of successful extensions: 69
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 13
Length of query: 70
Length of database: 11,106,569
Length adjustment: 42
Effective length of query: 28
Effective length of database: 9,955,097
Effective search space: 278742716
Effective search space used: 278742716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)