BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0244800 Os11g0244800|AK103215
(254 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0244800 Similar to Alfin-1 411 e-115
Os05g0419100 Similar to Nucleic acid binding protein-like 308 2e-84
AK059311 308 2e-84
Os01g0887700 Zinc finger, FYVE/PHD-type domain containing p... 308 3e-84
Os02g0564100 Similar to EL3 protein 302 1e-82
Os04g0444900 Similar to Alfin-1 283 6e-77
Os07g0608400 Similar to nucleic acid binding protein [Oryza... 268 2e-72
Os05g0163100 Zinc finger, FYVE/PHD-type domain containing p... 239 1e-63
Os07g0233300 Similar to Nucleic acid binding protein-like 233 1e-61
Os03g0818300 Zinc finger, PHD-type domain containing protein 231 3e-61
Os01g0158800 102 2e-22
>Os11g0244800 Similar to Alfin-1
Length = 254
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/254 (79%), Positives = 202/254 (79%)
Query: 1 MDGGGAHRTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETWXXXX 60
MDGGGAHRTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETW
Sbjct: 1 MDGGGAHRTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNL 60
Query: 61 XXXXXXXXXXXXXXGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESRKR 120
GINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESRKR
Sbjct: 61 PAEEVPPELPEPALGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESRKR 120
Query: 121 LFSMINNLPTIYEVVTGTAKKQSKEXXXXXXXXXXXXXXXXXRQPEPNSRGPKMPPPKXX 180
LFSMINNLPTIYEVVTGTAKKQSKE RQPEPNSRGPKMPPPK
Sbjct: 121 LFSMINNLPTIYEVVTGTAKKQSKEKTPKTSGKSNKSGTKPSRQPEPNSRGPKMPPPKDE 180
Query: 181 XXXXXXXXXXXXXXXNTLCGACGDNYGQDEFWICCDACETWFHGKCVKITPAKAEHIKHY 240
NTLCGACGDNYGQDEFWICCDACETWFHGKCVKITPAKAEHIKHY
Sbjct: 181 DDSGGEEEEEEEDHENTLCGACGDNYGQDEFWICCDACETWFHGKCVKITPAKAEHIKHY 240
Query: 241 KCPNCSSSSKRARA 254
KCPNCSSSSKRARA
Sbjct: 241 KCPNCSSSSKRARA 254
>Os05g0419100 Similar to Nucleic acid binding protein-like
Length = 258
Score = 308 bits (790), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 162/260 (62%), Positives = 181/260 (69%), Gaps = 8/260 (3%)
Query: 1 MDGGGA----HRTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETW 56
MDGG RT E+VFRDFR RRAGMIKALTTDVEKFYQ CDPEKENLCLYG PNETW
Sbjct: 1 MDGGSGGPYTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETW 60
Query: 57 XXXXXXXXXXXXXXXXXXGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKE 116
GINFARDGM+EKDWL+LVAVHSD+WLLAVAFYF ARFGFDKE
Sbjct: 61 EVTLPAEEVPPEIPEPALGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKE 120
Query: 117 SRKRLFSMINNLPTIYEVVTGTAKKQSKEXXXXXXXXXXXXXXXXXRQPEPNSRGPKMPP 176
+R+RLF+MINNLPTI+EVVTG AKKQ+KE +PE +S+ PK P
Sbjct: 121 ARRRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSSKMQPRPESHSKAPKPPA 180
Query: 177 PKXXXXXX--XXXXXXXXXXXNTLCGACGDNYGQDEFWICCDACETWFHGKCVKITPAKA 234
P NTLCG+CG N G+DEFWICCD+CE W+HGKCVKITPA+A
Sbjct: 181 PPKDDDESGDEYADEEEEERDNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARA 240
Query: 235 EHIKHYKCPNCSSSSKRARA 254
EHIKHYKCP+C +KRARA
Sbjct: 241 EHIKHYKCPDC--GNKRARA 258
>AK059311
Length = 258
Score = 308 bits (790), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 162/260 (62%), Positives = 181/260 (69%), Gaps = 8/260 (3%)
Query: 1 MDGGGA----HRTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETW 56
MDGG RT E+VFRDFR RRAGMIKALTTDVEKFYQ CDPEKENLCLYG PNETW
Sbjct: 1 MDGGSGGPYTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETW 60
Query: 57 XXXXXXXXXXXXXXXXXXGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKE 116
GINFARDGM+EKDWL+LVAVHSD+WLLAVAFYF ARFGFDKE
Sbjct: 61 EVTLPAEEVPPEIPEPALGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKE 120
Query: 117 SRKRLFSMINNLPTIYEVVTGTAKKQSKEXXXXXXXXXXXXXXXXXRQPEPNSRGPKMPP 176
+R+RLF+MINNLPTI+EVVTG AKKQ+KE +PE +S+ PK P
Sbjct: 121 ARRRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSSKMQPRPESHSKAPKPPA 180
Query: 177 PKXXXXXX--XXXXXXXXXXXNTLCGACGDNYGQDEFWICCDACETWFHGKCVKITPAKA 234
P NTLCG+CG N G+DEFWICCD+CE W+HGKCVKITPA+A
Sbjct: 181 PPKDDDESGDEYADEEEEERDNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARA 240
Query: 235 EHIKHYKCPNCSSSSKRARA 254
EHIKHYKCP+C +KRARA
Sbjct: 241 EHIKHYKCPDC--GNKRARA 258
>Os01g0887700 Zinc finger, FYVE/PHD-type domain containing protein
Length = 272
Score = 308 bits (788), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 151/249 (60%), Positives = 171/249 (68%), Gaps = 2/249 (0%)
Query: 6 AHRTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETWXXXXXXXXX 65
A RT E+VFRD R RRAGMIKALTTDVEKFY+ CDPEKENLCLYG PNETW
Sbjct: 26 ATRTAEEVFRDLRGRRAGMIKALTTDVEKFYKLCDPEKENLCLYGYPNETWEVTLPAEEV 85
Query: 66 XXXXXXXXXGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESRKRLFSMI 125
GINFARDGM+EKDWL+LVAVHSD+WLL+VAFYFGARFGFD+E+R+RLF+MI
Sbjct: 86 PPEIPEPALGINFARDGMNEKDWLALVAVHSDSWLLSVAFYFGARFGFDREARRRLFNMI 145
Query: 126 NNLPTIYEVVTGTAKKQSKEXXXXXXXXXXXXXXXXXRQPEPNSRGPKMPPPKXXXXXXX 185
NNLPTI+EVVTG AKKQ+KE + E S+ P
Sbjct: 146 NNLPTIFEVVTGAAKKQAKEKTPNSSSKSNKPSSKVQSKAESRSKSKLSAPKDEEGSGDD 205
Query: 186 XXXXXXXXXXNTLCGACGDNYGQDEFWICCDACETWFHGKCVKITPAKAEHIKHYKCPNC 245
NTLCG CG N G+DEFWICCD CE W+HGKCVKITPA+AEHIK YKCP+C
Sbjct: 206 EGEEEEDDHDNTLCGTCGTNDGKDEFWICCDNCEKWYHGKCVKITPARAEHIKQYKCPDC 265
Query: 246 SSSSKRARA 254
++KRARA
Sbjct: 266 --TNKRARA 272
>Os02g0564100 Similar to EL3 protein
Length = 267
Score = 302 bits (774), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 151/244 (61%), Positives = 166/244 (68%), Gaps = 4/244 (1%)
Query: 8 RTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETWXXXXXXXXXXX 67
R+ EDVFRDFRARRAG++KALTTDVEKFY+QCDPEKENLCLYGLPNETW
Sbjct: 27 RSAEDVFRDFRARRAGIVKALTTDVEKFYRQCDPEKENLCLYGLPNETWDVTLPAEEVPP 86
Query: 68 XXXXXXXGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESRKRLFSMINN 127
GINFARDGM EKDWLSLVAVHSD WLL+VAFYFGARFGFDKE+R+RLF+MIN
Sbjct: 87 ELPEPALGINFARDGMIEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKEARRRLFTMING 146
Query: 128 LPTIYEVVTGTAKKQSKEXXXXXXXXXXXXXXXXXRQPEPNSRGPKMPPPKXXXXXXXXX 187
LPT+YEVVTG AKKQ+K +Q NS+ K P PK
Sbjct: 147 LPTVYEVVTGIAKKQTK--VSNGSSKSNKSNPKPSKQSNSNSKPAKPPQPKDEEDSGPEG 204
Query: 188 XXXXXXXXNTLCGACGDNYGQDEFWICCDACETWFHGKCVKITPAKAEHIKHYKCPNCSS 247
+CGACG+ Y EFWICCD CE WFHGKCV+ITPAKAEHIK YKCP CSS
Sbjct: 205 TEDEDQAY--MCGACGETYANGEFWICCDVCEKWFHGKCVRITPAKAEHIKQYKCPGCSS 262
Query: 248 SSKR 251
R
Sbjct: 263 KRSR 266
>Os04g0444900 Similar to Alfin-1
Length = 256
Score = 283 bits (725), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 140/258 (54%), Positives = 166/258 (64%), Gaps = 10/258 (3%)
Query: 1 MDGGGAH-------RTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPN 53
MDGG R+PEDVF+DF RR+G++KALT +VEKFY+QCDPEKENLCLYGLPN
Sbjct: 1 MDGGYGSVTIVHDARSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPN 60
Query: 54 ETWXXXXXXXXXXXXXXXXXXGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGF 113
TW GINFARDGM EKDWLSL+AVHSD+WLL+VAFYFGARFGF
Sbjct: 61 GTWAVTLPADEVPPELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGF 120
Query: 114 DKESRKRLFSMINNLPTIYEVVTGTAKKQSKEXXXXXXXXXXXXXXXXXRQPEPNSRGPK 173
DK++R+RLF M ++LPT++EVV+G QSK ++P +S+ K
Sbjct: 121 DKKARERLFMMTSSLPTVFEVVSGGVNTQSK---TANGSSKNKSGSKPPKRPNSDSKPQK 177
Query: 174 MPPPKXXXXXXXXXXXXXXXXXNTLCGACGDNYGQDEFWICCDACETWFHGKCVKITPAK 233
K T+CGACG+ Y EFWICCD CETWFHGKCV+ITPAK
Sbjct: 178 QVQAKYEEENGGRGNGGDEDQAETICGACGEAYANGEFWICCDICETWFHGKCVRITPAK 237
Query: 234 AEHIKHYKCPNCSSSSKR 251
AEHIKHYKCP CS+ R
Sbjct: 238 AEHIKHYKCPGCSNKRTR 255
>Os07g0608400 Similar to nucleic acid binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 278
Score = 268 bits (686), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/258 (53%), Positives = 156/258 (60%), Gaps = 13/258 (5%)
Query: 1 MDGGGAHRTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETWXXXX 60
MD RT E+VFRDF+ RRAG+++ALT DVE F++QCDPEKENLCLYG PNE W
Sbjct: 1 MDAQYNPRTVEEVFRDFKGRRAGLVRALTADVEDFFRQCDPEKENLCLYGFPNEHWEVNL 60
Query: 61 XXXXXXXXXXXXXXGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESRKR 120
GINFARDGM EKDWLS+VAVHSD WLL+VAFYFGARFGFDK RKR
Sbjct: 61 PAEEVPPELPEPALGINFARDGMQEKDWLSMVAVHSDAWLLSVAFYFGARFGFDKNDRKR 120
Query: 121 LFSMINNLPTIYEVVTGTAKKQSKEXXXXXXXXXXXXXXXXXRQPEP------------- 167
LF MIN+LPTI+EVV+G +K + +P
Sbjct: 121 LFGMINDLPTIFEVVSGKSKAKPPSANNHSNSKSKSSNKTKSSEPRAKQPKPQPQPPVKN 180
Query: 168 NSRGPKMPPPKXXXXXXXXXXXXXXXXXNTLCGACGDNYGQDEFWICCDACETWFHGKCV 227
R + P TLCGACG++YG DEFWICCD CE WFHGKCV
Sbjct: 181 EGREEEGGPDDEEGGGGGGGGGREEEHGETLCGACGESYGADEFWICCDICEKWFHGKCV 240
Query: 228 KITPAKAEHIKHYKCPNC 245
KITPAKAEHIK YKCP+C
Sbjct: 241 KITPAKAEHIKQYKCPSC 258
>Os05g0163100 Zinc finger, FYVE/PHD-type domain containing protein
Length = 258
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/247 (48%), Positives = 146/247 (59%), Gaps = 10/247 (4%)
Query: 5 GAHRTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETWXXXXXXXX 64
A R+ ED+F+DFRARR +++ALT DVE FY QCDPEKENLCLYG NE W
Sbjct: 21 SAPRSVEDIFKDFRARRTAILRALTHDVEDFYAQCDPEKENLCLYGYANEAWQVALPAEE 80
Query: 65 XXXXXXXXXXGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESRKRLFSM 124
GINFARDGM+ +DWL+LVAVHSD+WL++VAFY+ AR ++ RKRLF M
Sbjct: 81 VPTELPEPALGINFARDGMNRRDWLALVAVHSDSWLVSVAFYYAAR--LNRNDRKRLFGM 138
Query: 125 INNLPTIYEVVTGTAKKQSKEXXXXXXXXXXXXXXXXXRQPEPNSRGPKMPPPKXXXXXX 184
+N+LPT+YEVV+G+ +QSKE + +
Sbjct: 139 MNDLPTVYEVVSGS--RQSKERDRSGMDNSSRNKISSKHTSDVARVENNI------KEED 190
Query: 185 XXXXXXXXXXXNTLCGACGDNYGQDEFWICCDACETWFHGKCVKITPAKAEHIKHYKCPN 244
TLCG CG Y DEFWI CD CE W+HGKCVKITPAKAE IK YKCP+
Sbjct: 191 EGYDEDDGDHSETLCGTCGGIYSADEFWIGCDVCERWYHGKCVKITPAKAESIKQYKCPS 250
Query: 245 CSSSSKR 251
CSS R
Sbjct: 251 CSSKRPR 257
>Os07g0233300 Similar to Nucleic acid binding protein-like
Length = 244
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 119/245 (48%), Positives = 142/245 (57%), Gaps = 13/245 (5%)
Query: 6 AHRTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETWXXXXXXXXX 65
A RT ED+F+DF RRAG+++ALT DV++FY CDPEKENLCLYG PN W
Sbjct: 10 APRTVEDIFKDFSGRRAGLVRALTVDVDEFYGFCDPEKENLCLYGHPNGRWEVALPAEEV 69
Query: 66 XXXXXXXXXGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESRKRLFSMI 125
GINFARDGM +DWLSLVAVHSD+WLL+VAF+FGAR + RKRLFS+I
Sbjct: 70 PPELPEPALGINFARDGMHRRDWLSLVAVHSDSWLLSVAFFFGAR--LNGNERKRLFSLI 127
Query: 126 NNLPTIYEVVTGTAKKQSKEXXXXXXXXXXXXXXXXXRQPEPNSRGPKMPPPKXXXXXXX 185
N+ PT+ E ++ + + SR +
Sbjct: 128 NDHPTVLEALSDRKHGRDNKSGADNGSKSRHSGKRANDVQTKTSRPAVV----------- 176
Query: 186 XXXXXXXXXXNTLCGACGDNYGQDEFWICCDACETWFHGKCVKITPAKAEHIKHYKCPNC 245
TLCG CG Y +EFWI CD CE WFHGKCV+ITPAKAEHIKHYKCP+C
Sbjct: 177 DDGYDEEEHSETLCGTCGGRYNANEFWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDC 236
Query: 246 SSSSK 250
SSS K
Sbjct: 237 SSSKK 241
>Os03g0818300 Zinc finger, PHD-type domain containing protein
Length = 247
Score = 231 bits (589), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/244 (45%), Positives = 146/244 (59%), Gaps = 14/244 (5%)
Query: 8 RTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETWXXXXXXXXXXX 67
RT ED+F+D+ ARR +++ALT+DV++F+ CDP+KENLCLYGL N +W
Sbjct: 14 RTVEDIFKDYSARRGALVRALTSDVDEFFGLCDPDKENLCLYGLANGSWEVALPAEEVPP 73
Query: 68 XXXXXXXGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESRKRLFSMINN 127
GINFARDGM+ +DWLSLVAVHSD+WL++VAF+F AR + RKRLF+MIN+
Sbjct: 74 ELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFFFAAR--LNGNERKRLFNMIND 131
Query: 128 LPTIYEVVTGTAKKQSKEXXXXXXXXXXXXXXXXXRQPEPNSRGPKMPPPKXXXXXXXXX 187
LPT+YE + + + + + +++ K
Sbjct: 132 LPTVYEALVDRKHVRDRSGVDSSG------------KSKHSTKRTGEGQVKRSRVVAEEY 179
Query: 188 XXXXXXXXNTLCGACGDNYGQDEFWICCDACETWFHGKCVKITPAKAEHIKHYKCPNCSS 247
T CG CG Y +EFWI CD CE WFHGKCV+ITPAKAEHIKHYKCP+CSS
Sbjct: 180 EDDDEEHNETFCGTCGGLYNANEFWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDCSS 239
Query: 248 SSKR 251
SS +
Sbjct: 240 SSSK 243
>Os01g0158800
Length = 150
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 67/104 (64%)
Query: 6 AHRTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETWXXXXXXXXX 65
A R+ ED+F DFRARR+ +++ALT D+EKF C+P+ + LCLYG + TW
Sbjct: 32 ALRSVEDIFSDFRARRSAIVRALTEDLEKFAALCNPDLDCLCLYGNSDGTWEVAPPPEMV 91
Query: 66 XXXXXXXXXGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGA 109
GINF+RD M DW++L++V SD+WLLAVAF+ GA
Sbjct: 92 PPELPEPALGINFSRDTMYRSDWVALLSVFSDSWLLAVAFFHGA 135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,317,359
Number of extensions: 278826
Number of successful extensions: 636
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 613
Number of HSP's successfully gapped: 14
Length of query: 254
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 155
Effective length of database: 11,866,615
Effective search space: 1839325325
Effective search space used: 1839325325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)