Os01g0887700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, FYVE/PHD-type domain containing protein.
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Os01g0887700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, FYVE/PHD-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.51 | 0.272 | 10.5 | 0.486 | 0.789 | -1.09 | -0.647 | 0.56 | 0.141 | 1.73 | 26.17 | 252 | -- | -- |
| 33.88 | 0.271 | 10.5 | 0.585 | 0.782 | -1.12 | -0.528 | -- | 0.165 | 1.67 | 25.88 | 255 | -- | -- |
| 34.92 | 0.275 | 10.5 | 0.574 | 0.788 | -1.11 | -- | 0.172 | 0.16 | 1.64 | 26.08 | 253 | -- | -- |
| 34.96 | 0.275 | 10.5 | 0.604 | 0.787 | -1.11 | -- | -- | 0.167 | 1.62 | 26 | 252 | -- | -- |
| 50.63 | 0.331 | 10.5 | 0.419 | -- | -1.25 | -- | 0.617 | 0.107 | -- | 26.6 | 948 | -- | -- |
| 52.28 | 0.339 | 10.5 | 0.875 | 0.627 | -- | -0.485 | -- | 0.409 | 0.901 | -- | -- | -- | -- |
| 53.26 | 0.342 | 10.5 | 0.893 | 0.627 | -- | -- | -- | 0.412 | 0.798 | -- | -- | -- | -- |
| 51.06 | 0.333 | 10.5 | 0.535 | -- | -1.29 | -- | -- | 0.134 | -- | 26.3 | 942 | -- | -- |
| 43.65 | 0.308 | 10.5 | -- | 0.8 | -1.34 | -- | -- | 0.0701 | 1.71 | 25.75 | 257 | -- | -- |
| 77.82 | 0.412 | 10.5 | 0.916 | -- | -- | -- | -- | 0.423 | -- | -- | -- | -- | -- |
| 74.29 | 0.403 | 10.5 | -- | 0.641 | -- | -- | -- | 0.312 | 0.861 | -- | -- | -- | -- |
| 57.64 | 0.354 | 10.5 | -- | -- | -1.52 | -- | -- | 0.0292 | -- | 26.3 | 963 | -- | -- |
| 99.96 | 0.467 | 10.5 | -- | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 2 | 33.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 18 | 34.05 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 23 | 34.07 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 40 | 34.30 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 43 | 34.32 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 56 | 34.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 58 | 34.38 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 60 | 34.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 63 | 34.39 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 70 | 34.42 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 71 | 34.42 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 80 | 34.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 82 | 34.45 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 89 | 34.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 13 |
| 90 | 34.48 | temperature | 15 | 270 | > th | dose dependent | sin | 9 | NA |
| 91 | 34.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 101 | 34.51 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 126 | 34.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 138 | 34.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 14 |
| 142 | 34.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 11 |
| 144 | 34.59 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 212 | 34.68 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 250 | 34.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 462 | 34.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 651 | 35.22 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 657 | 35.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 913 | 35.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 941 | 35.53 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 944 | 35.53 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 985 | 35.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |