Os02g0564100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to EL3 protein.
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Os02g0564100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to EL3 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.61 | 0.203 | 14.1 | -0.0136 | 0.251 | 0.511 | 0.185 | -3.27 | 0.23 | 23.6 | 25.97 | 4503 | -- | -- |
| 20.15 | 0.209 | 14 | 0.645 | 0.245 | 0.273 | 0.173 | -- | 0.306 | 22.9 | 18.28 | 7071 | -- | -- |
| 18.75 | 0.202 | 14.1 | -0.0239 | 0.251 | 0.513 | -- | -3.28 | 0.231 | 23.4 | 26 | 4502 | -- | -- |
| 20.21 | 0.209 | 14 | 0.63 | 0.243 | 0.288 | -- | -- | 0.289 | 23.1 | 18.13 | 7101 | -- | -- |
| 22.25 | 0.22 | 14 | 0.276 | -- | 0.418 | -- | -1.53 | 0.202 | -- | 23.15 | 2313 | -- | -- |
| 22.22 | 0.221 | 14 | 0.8 | 0.256 | -- | 0.199 | -- | 0.38 | 23.5 | -- | -- | -- | -- |
| 22.38 | 0.222 | 14 | 0.792 | 0.256 | -- | -- | -- | 0.38 | 23.3 | -- | -- | -- | -- |
| 21.96 | 0.218 | 14 | 0.654 | -- | 0.521 | -- | -- | 0.296 | -- | 15.2 | 884 | -- | -- |
| 24.96 | 0.233 | 14 | -- | 0.24 | 0.613 | -- | -- | 0.108 | 23.3 | 9.434 | 47056 | -- | -- |
| 26.48 | 0.24 | 14 | 0.799 | -- | -- | -- | -- | 0.382 | -- | -- | -- | -- | -- |
| 38.92 | 0.292 | 14 | -- | 0.264 | -- | -- | -- | 0.292 | 23.5 | -- | -- | -- | -- |
| 28.63 | 0.249 | 14 | -- | -- | 0.612 | -- | -- | 0.114 | -- | 8.505 | 47037 | -- | -- |
| 43.31 | 0.307 | 14 | -- | -- | -- | -- | -- | 0.294 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.05 | humidity | 70 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 5 | 17.16 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 23 | 17.19 | humidity | 70 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 33 | 17.21 | radiation | 30 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 42 | 17.22 | radiation | 20 | 43200 | > th | dose independent | sin | 10 | NA |
| 43 | 17.22 | radiation | 30 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 52 | 17.23 | humidity | 70 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 57 | 17.23 | radiation | 10 | 43200 | < th | dose independent | rect. | 7 | 7 |
| 70 | 17.23 | radiation | 20 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 71 | 17.23 | radiation | 30 | 43200 | < th | dose dependent | rect. | 7 | 4 |
| 154 | 17.25 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 22 |
| 155 | 17.25 | radiation | 30 | 43200 | < th | dose dependent | sin | 7 | NA |
| 287 | 17.27 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 323 | 17.27 | radiation | 1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 324 | 17.27 | radiation | 20 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 336 | 17.27 | radiation | 1 | 43200 | > th | dose dependent | rect. | 7 | 7 |
| 391 | 17.28 | radiation | 40 | 43200 | > th | dose independent | sin | 3 | NA |
| 396 | 17.28 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 491 | 17.29 | radiation | 40 | 43200 | > th | dose independent | sin | 7 | NA |
| 494 | 17.29 | radiation | 40 | 43200 | > th | dose independent | sin | 23 | NA |
| 499 | 17.29 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |
| 721 | 17.29 | radiation | 1 | 43200 | > th | dose dependent | sin | 7 | NA |
| 722 | 17.29 | radiation | 1 | 43200 | > th | dose dependent | sin | 5 | NA |
| 794 | 17.30 | radiation | 40 | 43200 | > th | dose independent | sin | 21 | NA |
| 798 | 17.30 | radiation | 10 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 810 | 17.30 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 814 | 17.30 | humidity | 70 | 43200 | < th | dose dependent | sin | 6 | NA |
| 902 | 17.31 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 2 |