BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0564100 Os02g0564100|AK073526
(267 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0564100 Similar to EL3 protein 406 e-114
Os04g0444900 Similar to Alfin-1 301 2e-82
Os11g0244800 Similar to Alfin-1 296 9e-81
Os05g0419100 Similar to Nucleic acid binding protein-like 289 1e-78
AK059311 289 1e-78
Os01g0887700 Zinc finger, FYVE/PHD-type domain containing p... 285 3e-77
Os05g0163100 Zinc finger, FYVE/PHD-type domain containing p... 242 2e-64
Os07g0233300 Similar to Nucleic acid binding protein-like 231 4e-61
Os03g0818300 Zinc finger, PHD-type domain containing protein 226 2e-59
Os07g0608400 Similar to nucleic acid binding protein [Oryza... 199 2e-51
Os01g0158800 108 5e-24
>Os02g0564100 Similar to EL3 protein
Length = 267
Score = 406 bits (1043), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/246 (81%), Positives = 200/246 (81%)
Query: 22 VHHNARSAEDVFRDFRARRAGIVKALTTDVEKFYRQCDPEKENLCLYGLPNETWDVTXXX 81
VHHNARSAEDVFRDFRARRAGIVKALTTDVEKFYRQCDPEKENLCLYGLPNETWDVT
Sbjct: 22 VHHNARSAEDVFRDFRARRAGIVKALTTDVEKFYRQCDPEKENLCLYGLPNETWDVTLPA 81
Query: 82 XXXXXXXXXXXXGINFARDGMIEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKEARRRLF 141
GINFARDGMIEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKEARRRLF
Sbjct: 82 EEVPPELPEPALGINFARDGMIEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKEARRRLF 141
Query: 142 TMINGLPTVYEVVTGIAKKQTKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEDSG 201
TMINGLPTVYEVVTGIAKKQTKV DEEDSG
Sbjct: 142 TMINGLPTVYEVVTGIAKKQTKVSNGSSKSNKSNPKPSKQSNSNSKPAKPPQPKDEEDSG 201
Query: 202 PEGTEDEDQAYMCGACGETYANGEFWICCDVCEKWFHGKCVRITPAKAEHIKQYKCPGCS 261
PEGTEDEDQAYMCGACGETYANGEFWICCDVCEKWFHGKCVRITPAKAEHIKQYKCPGCS
Sbjct: 202 PEGTEDEDQAYMCGACGETYANGEFWICCDVCEKWFHGKCVRITPAKAEHIKQYKCPGCS 261
Query: 262 SKRSRE 267
SKRSRE
Sbjct: 262 SKRSRE 267
>Os04g0444900 Similar to Alfin-1
Length = 256
Score = 301 bits (772), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/247 (62%), Positives = 173/247 (70%), Gaps = 1/247 (0%)
Query: 22 VHHNARSAEDVFRDFRARRAGIVKALTTDVEKFYRQCDPEKENLCLYGLPNETWDVTXXX 81
+ H+ARS EDVF+DF RR+GIVKALT +VEKFY+QCDPEKENLCLYGLPN TW VT
Sbjct: 10 IVHDARSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPNGTWAVTLPA 69
Query: 82 XXXXXXXXXXXXGINFARDGMIEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKEARRRLF 141
GINFARDGM EKDWLSL+AVHSD+WLLSVAFYFGARFGFDK+AR RLF
Sbjct: 70 DEVPPELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGFDKKARERLF 129
Query: 142 TMINGLPTVYEVVTGIAKKQTKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEDSG 201
M + LPTV+EVV+G Q+K +EE+ G
Sbjct: 130 MMTSSLPTVFEVVSGGVNTQSKTANGSSKNKSGSKPPKRPNSDSKPQKQVQAKYEEENGG 189
Query: 202 PEGTEDEDQA-YMCGACGETYANGEFWICCDVCEKWFHGKCVRITPAKAEHIKQYKCPGC 260
DEDQA +CGACGE YANGEFWICCD+CE WFHGKCVRITPAKAEHIK YKCPGC
Sbjct: 190 RGNGGDEDQAETICGACGEAYANGEFWICCDICETWFHGKCVRITPAKAEHIKHYKCPGC 249
Query: 261 SSKRSRE 267
S+KR+RE
Sbjct: 250 SNKRTRE 256
>Os11g0244800 Similar to Alfin-1
Length = 254
Score = 296 bits (759), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 148/244 (60%), Positives = 168/244 (68%), Gaps = 4/244 (1%)
Query: 27 RSAEDVFRDFRARRAGIVKALTTDVEKFYRQCDPEKENLCLYGLPNETWDVTXXXXXXXX 86
R+ EDVFRDFRARRAG++KALTTDVEKFY+QCDPEKENLCLYGLPNETW+V
Sbjct: 8 RTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPAEEVPP 67
Query: 87 XXXXXXXGINFARDGMIEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKEARRRLFTMING 146
GINFARDGM EKDWLSLVAVHSD WLL+VAFYFGARFGFDKE+R+RLF+MIN
Sbjct: 68 ELPEPALGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESRKRLFSMINN 127
Query: 147 LPTVYEVVTGIAKKQTKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEDSGPEGTE 206
LPT+YEVVTG AKKQ+K +++ G E
Sbjct: 128 LPTIYEVVTGTAKKQSKEKTPKTSGKSNKSGTKPSRQPEPNSRGPKMPPPKDEDDSGGEE 187
Query: 207 DEDQAY----MCGACGETYANGEFWICCDVCEKWFHGKCVRITPAKAEHIKQYKCPGCSS 262
+E++ +CGACG+ Y EFWICCD CE WFHGKCV+ITPAKAEHIK YKCP CSS
Sbjct: 188 EEEEEDHENTLCGACGDNYGQDEFWICCDACETWFHGKCVKITPAKAEHIKHYKCPNCSS 247
Query: 263 KRSR 266
R
Sbjct: 248 SSKR 251
>Os05g0419100 Similar to Nucleic acid binding protein-like
Length = 258
Score = 289 bits (739), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 143/249 (57%), Positives = 166/249 (66%), Gaps = 6/249 (2%)
Query: 24 HNARSAEDVFRDFRARRAGIVKALTTDVEKFYRQCDPEKENLCLYGLPNETWDVTXXXXX 83
+ +R+AE+VFRDFR RRAG++KALTTDVEKFY+ CDPEKENLCLYG PNETW+VT
Sbjct: 9 YTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETWEVTLPAEE 68
Query: 84 XXXXXXXXXXGINFARDGMIEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKEARRRLFTM 143
GINFARDGM EKDWL+LVAVHSD+WLL+VAFYF ARFGFDKEARRRLF M
Sbjct: 69 VPPEIPEPALGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKEARRRLFNM 128
Query: 144 INGLPTVYEVVTGIAKKQTKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEDSGPE 203
IN LPT++EVVTG AKKQTK +D
Sbjct: 129 INNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSSKMQPRPESHSKAPKPPAPPKDDDES 188
Query: 204 GTEDEDQAY------MCGACGETYANGEFWICCDVCEKWFHGKCVRITPAKAEHIKQYKC 257
G E D+ +CG+CG EFWICCD CE+W+HGKCV+ITPA+AEHIK YKC
Sbjct: 189 GDEYADEEEEERDNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARAEHIKHYKC 248
Query: 258 PGCSSKRSR 266
P C +KR+R
Sbjct: 249 PDCGNKRAR 257
>AK059311
Length = 258
Score = 289 bits (739), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 143/249 (57%), Positives = 166/249 (66%), Gaps = 6/249 (2%)
Query: 24 HNARSAEDVFRDFRARRAGIVKALTTDVEKFYRQCDPEKENLCLYGLPNETWDVTXXXXX 83
+ +R+AE+VFRDFR RRAG++KALTTDVEKFY+ CDPEKENLCLYG PNETW+VT
Sbjct: 9 YTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETWEVTLPAEE 68
Query: 84 XXXXXXXXXXGINFARDGMIEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKEARRRLFTM 143
GINFARDGM EKDWL+LVAVHSD+WLL+VAFYF ARFGFDKEARRRLF M
Sbjct: 69 VPPEIPEPALGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKEARRRLFNM 128
Query: 144 INGLPTVYEVVTGIAKKQTKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEDSGPE 203
IN LPT++EVVTG AKKQTK +D
Sbjct: 129 INNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSSKMQPRPESHSKAPKPPAPPKDDDES 188
Query: 204 GTEDEDQAY------MCGACGETYANGEFWICCDVCEKWFHGKCVRITPAKAEHIKQYKC 257
G E D+ +CG+CG EFWICCD CE+W+HGKCV+ITPA+AEHIK YKC
Sbjct: 189 GDEYADEEEEERDNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARAEHIKHYKC 248
Query: 258 PGCSSKRSR 266
P C +KR+R
Sbjct: 249 PDCGNKRAR 257
>Os01g0887700 Zinc finger, FYVE/PHD-type domain containing protein
Length = 272
Score = 285 bits (728), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 142/247 (57%), Positives = 167/247 (67%), Gaps = 4/247 (1%)
Query: 24 HNARSAEDVFRDFRARRAGIVKALTTDVEKFYRQCDPEKENLCLYGLPNETWDVTXXXXX 83
+ R+AE+VFRD R RRAG++KALTTDVEKFY+ CDPEKENLCLYG PNETW+VT
Sbjct: 25 YATRTAEEVFRDLRGRRAGMIKALTTDVEKFYKLCDPEKENLCLYGYPNETWEVTLPAEE 84
Query: 84 XXXXXXXXXXGINFARDGMIEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKEARRRLFTM 143
GINFARDGM EKDWL+LVAVHSD+WLLSVAFYFGARFGFD+EARRRLF M
Sbjct: 85 VPPEIPEPALGINFARDGMNEKDWLALVAVHSDSWLLSVAFYFGARFGFDREARRRLFNM 144
Query: 144 INGLPTVYEVVTGIAKKQTKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEDSGPE 203
IN LPT++EVVTG AKKQ K +E+ +
Sbjct: 145 INNLPTIFEVVTGAAKKQAKEKTPNSSSKSNKPSSKVQSKAESRSKSKLSAPKDEEGSGD 204
Query: 204 GTEDEDQAY----MCGACGETYANGEFWICCDVCEKWFHGKCVRITPAKAEHIKQYKCPG 259
+E++ +CG CG EFWICCD CEKW+HGKCV+ITPA+AEHIKQYKCP
Sbjct: 205 DEGEEEEDDHDNTLCGTCGTNDGKDEFWICCDNCEKWYHGKCVKITPARAEHIKQYKCPD 264
Query: 260 CSSKRSR 266
C++KR+R
Sbjct: 265 CTNKRAR 271
>Os05g0163100 Zinc finger, FYVE/PHD-type domain containing protein
Length = 258
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 150/241 (62%), Gaps = 6/241 (2%)
Query: 27 RSAEDVFRDFRARRAGIVKALTTDVEKFYRQCDPEKENLCLYGLPNETWDVTXXXXXXXX 86
RS ED+F+DFRARR I++ALT DVE FY QCDPEKENLCLYG NE W V
Sbjct: 24 RSVEDIFKDFRARRTAILRALTHDVEDFYAQCDPEKENLCLYGYANEAWQVALPAEEVPT 83
Query: 87 XXXXXXXGINFARDGMIEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKEARRRLFTMING 146
GINFARDGM +DWL+LVAVHSD+WL+SVAFY+ AR ++ R+RLF M+N
Sbjct: 84 ELPEPALGINFARDGMNRRDWLALVAVHSDSWLVSVAFYYAAR--LNRNDRKRLFGMMND 141
Query: 147 LPTVYEVVTGIAKKQTKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEDSGPEGTE 206
LPTVYEVV+G +Q+K ++E + +
Sbjct: 142 LPTVYEVVSG--SRQSKERDRSGMDNSSRNKISSKHTSDVARVENNIKEEDEGYDEDDGD 199
Query: 207 DEDQAYMCGACGETYANGEFWICCDVCEKWFHGKCVRITPAKAEHIKQYKCPGCSSKRSR 266
+ +CG CG Y+ EFWI CDVCE+W+HGKCV+ITPAKAE IKQYKCP CSSKR R
Sbjct: 200 HSET--LCGTCGGIYSADEFWIGCDVCERWYHGKCVKITPAKAESIKQYKCPSCSSKRPR 257
Query: 267 E 267
+
Sbjct: 258 Q 258
>Os07g0233300 Similar to Nucleic acid binding protein-like
Length = 244
Score = 231 bits (589), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 120/242 (49%), Positives = 147/242 (60%), Gaps = 10/242 (4%)
Query: 27 RSAEDVFRDFRARRAGIVKALTTDVEKFYRQCDPEKENLCLYGLPNETWDVTXXXXXXXX 86
R+ ED+F+DF RRAG+V+ALT DV++FY CDPEKENLCLYG PN W+V
Sbjct: 12 RTVEDIFKDFSGRRAGLVRALTVDVDEFYGFCDPEKENLCLYGHPNGRWEVALPAEEVPP 71
Query: 87 XXXXXXXGINFARDGMIEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKEARRRLFTMING 146
GINFARDGM +DWLSLVAVHSD+WLLSVAF+FGAR ++ R+RLF++IN
Sbjct: 72 ELPEPALGINFARDGMHRRDWLSLVAVHSDSWLLSVAFFFGARLNGNE--RKRLFSLIND 129
Query: 147 LPTVYEVVTGIAKKQTKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEDSGPEGTE 206
PTV E ++ +K + D+ E
Sbjct: 130 HPTVLEALSD--RKHGRDNKSGADNGSKSRHSGKRANDVQTKTSRPAVVDDGYD-----E 182
Query: 207 DEDQAYMCGACGETYANGEFWICCDVCEKWFHGKCVRITPAKAEHIKQYKCPGC-SSKRS 265
+E +CG CG Y EFWI CD+CE+WFHGKCVRITPAKAEHIK YKCP C SSK+S
Sbjct: 183 EEHSETLCGTCGGRYNANEFWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDCSSSKKS 242
Query: 266 RE 267
R+
Sbjct: 243 RQ 244
>Os03g0818300 Zinc finger, PHD-type domain containing protein
Length = 247
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/246 (46%), Positives = 145/246 (58%), Gaps = 10/246 (4%)
Query: 22 VHHNARSAEDVFRDFRARRAGIVKALTTDVEKFYRQCDPEKENLCLYGLPNETWDVTXXX 81
V N R+ ED+F+D+ ARR +V+ALT+DV++F+ CDP+KENLCLYGL N +W+V
Sbjct: 9 VASNPRTVEDIFKDYSARRGALVRALTSDVDEFFGLCDPDKENLCLYGLANGSWEVALPA 68
Query: 82 XXXXXXXXXXXXGINFARDGMIEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKEARRRLF 141
GINFARDGM +DWLSLVAVHSD+WL+SVAF+F AR ++ R+RLF
Sbjct: 69 EEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFFFAARLNGNE--RKRLF 126
Query: 142 TMINGLPTVYEVVTGIAKKQTKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEDSG 201
MIN LPTVYE + + + D+++
Sbjct: 127 NMINDLPTVYEALVDRKHVRDRSGVDSSGKSKHSTKRTGEGQVKRSRVVAEEYEDDDEEH 186
Query: 202 PEGTEDEDQAYMCGACGETYANGEFWICCDVCEKWFHGKCVRITPAKAEHIKQYKCPGCS 261
E CG CG Y EFWI CD+CE+WFHGKCVRITPAKAEHIK YKCP CS
Sbjct: 187 NE--------TFCGTCGGLYNANEFWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDCS 238
Query: 262 SKRSRE 267
S S++
Sbjct: 239 SSSSKK 244
>Os07g0608400 Similar to nucleic acid binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 278
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 93/140 (66%), Positives = 108/140 (77%)
Query: 22 VHHNARSAEDVFRDFRARRAGIVKALTTDVEKFYRQCDPEKENLCLYGLPNETWDVTXXX 81
+N R+ E+VFRDF+ RRAG+V+ALT DVE F+RQCDPEKENLCLYG PNE W+V
Sbjct: 3 AQYNPRTVEEVFRDFKGRRAGLVRALTADVEDFFRQCDPEKENLCLYGFPNEHWEVNLPA 62
Query: 82 XXXXXXXXXXXXGINFARDGMIEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKEARRRLF 141
GINFARDGM EKDWLS+VAVHSDAWLLSVAFYFGARFGFDK R+RLF
Sbjct: 63 EEVPPELPEPALGINFARDGMQEKDWLSMVAVHSDAWLLSVAFYFGARFGFDKNDRKRLF 122
Query: 142 TMINGLPTVYEVVTGIAKKQ 161
MIN LPT++EVV+G +K +
Sbjct: 123 GMINDLPTIFEVVSGKSKAK 142
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 44/48 (91%)
Query: 213 MCGACGETYANGEFWICCDVCEKWFHGKCVRITPAKAEHIKQYKCPGC 260
+CGACGE+Y EFWICCD+CEKWFHGKCV+ITPAKAEHIKQYKCP C
Sbjct: 211 LCGACGESYGADEFWICCDICEKWFHGKCVKITPAKAEHIKQYKCPSC 258
>Os01g0158800
Length = 150
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 68/102 (66%)
Query: 27 RSAEDVFRDFRARRAGIVKALTTDVEKFYRQCDPEKENLCLYGLPNETWDVTXXXXXXXX 86
RS ED+F DFRARR+ IV+ALT D+EKF C+P+ + LCLYG + TW+V
Sbjct: 34 RSVEDIFSDFRARRSAIVRALTEDLEKFAALCNPDLDCLCLYGNSDGTWEVAPPPEMVPP 93
Query: 87 XXXXXXXGINFARDGMIEKDWLSLVAVHSDAWLLSVAFYFGA 128
GINF+RD M DW++L++V SD+WLL+VAF+ GA
Sbjct: 94 ELPEPALGINFSRDTMYRSDWVALLSVFSDSWLLAVAFFHGA 135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,289,675
Number of extensions: 248533
Number of successful extensions: 670
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 14
Length of query: 267
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 168
Effective length of database: 11,866,615
Effective search space: 1993591320
Effective search space used: 1993591320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)