Os05g0419100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nucleic acid binding protein-like.
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Os05g0419100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nucleic acid binding protein-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.62 | 0.153 | 12 | 0.102 | 0.0812 | 0.449 | -0.348 | -0.766 | -0.0247 | 21.3 | 93.74 | 336 | -- | -- |
| 11 | 0.154 | 12 | 0.0914 | 0.0853 | 0.449 | -0.228 | -- | -0.0281 | 22.3 | 93.84 | 367 | -- | -- |
| 10.96 | 0.154 | 12 | 0.109 | 0.0821 | 0.555 | -- | -0.62 | -0.0339 | 21.8 | 94.42 | 308 | -- | -- |
| 11.16 | 0.156 | 12 | 0.102 | 0.0806 | 0.587 | -- | -- | -0.0354 | 21.9 | 94.53 | 308 | -- | -- |
| 11.29 | 0.156 | 12 | 0.111 | -- | 0.524 | -- | -0.674 | -0.0371 | -- | 94.52 | 294 | -- | -- |
| 12.69 | 0.167 | 12 | 0.101 | 0.0706 | -- | -0.202 | -- | -0.0673 | 0.832 | -- | -- | -- | -- |
| 12.83 | 0.168 | 12 | 0.108 | 0.0757 | -- | -- | -- | -0.0667 | 2.04 | -- | -- | -- | -- |
| 11.52 | 0.158 | 12 | 0.104 | -- | 0.565 | -- | -- | -0.0397 | -- | 94.61 | 293 | -- | -- |
| 11.43 | 0.157 | 12 | -- | 0.0798 | 0.578 | -- | -- | -0.0435 | 21.9 | 94.46 | 305 | -- | -- |
| 13.18 | 0.17 | 12 | 0.111 | -- | -- | -- | -- | -0.0649 | -- | -- | -- | -- | -- |
| 13.14 | 0.17 | 12 | -- | 0.0777 | -- | -- | -- | -0.0788 | 2.07 | -- | -- | -- | -- |
| 11.79 | 0.16 | 12 | -- | -- | 0.559 | -- | -- | -0.0503 | -- | 94.56 | 286 | -- | -- |
| 13.5 | 0.172 | 12 | -- | -- | -- | -- | -- | -0.0773 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.88 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 5 | 5 |
| 2 | 10.90 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 4 | 10.96 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 9 | 11.04 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 12 | 11.05 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 36 | 11.26 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 39 | 11.28 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 52 | 11.31 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 55 | 11.32 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 18 |
| 61 | 11.33 | humidity | 90.0 | 30 | > th | dose independent | rect. | 5 | 5 |
| 67 | 11.33 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 76 | 11.34 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 77 | 11.35 | humidity | 90.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 94 | 11.37 | humidity | 90.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 98 | 11.37 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 17 | 6 |
| 103 | 11.38 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 18 | 5 |
| 107 | 11.39 | radiation | 10.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 113 | 11.39 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 132 | 11.41 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 10 |
| 133 | 11.42 | temperature | 25.0 | 30 | > th | dose independent | rect. | 17 | 6 |
| 146 | 11.43 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 3 | 6 |
| 149 | 11.43 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 156 | 11.44 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 23 | 6 |
| 160 | 11.44 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 24 | 8 |
| 164 | 11.45 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 165 | 11.45 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 5 | 5 |
| 166 | 11.45 | humidity | 90.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 168 | 11.45 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 179 | 11.45 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 22 | 18 |
| 192 | 11.46 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 1 | 8 |
| 235 | 11.48 | radiation | 10.0 | 30 | < th | dose independent | rect. | 5 | 23 |
| 261 | 11.49 | temperature | 25.0 | 30 | < th | dose independent | rect. | 5 | 5 |
| 281 | 11.49 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 305 | 11.50 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 5 | 7 |
| 310 | 11.50 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 322 | 11.50 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 14 | 16 |
| 371 | 11.51 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 4 | 22 |
| 379 | 11.52 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 23 | 18 |
| 388 | 11.52 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 18 | 10 |
| 415 | 11.52 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 425 | 11.53 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 5 | 5 |
| 432 | 11.53 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 18 | 8 |
| 434 | 11.53 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 448 | 11.53 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 477 | 11.54 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 18 | 1 |
| 485 | 11.54 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 567 | 11.55 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 614 | 11.56 | humidity | 90.0 | 720 | > th | dose dependent | no | NA | NA |
| 695 | 11.58 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 741 | 11.59 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 16 |
| 777 | 11.60 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 23 | 6 |
| 780 | 11.60 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 782 | 11.60 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 814 | 11.61 | temperature | 25.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 825 | 11.61 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 845 | 11.61 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 853 | 11.62 | radiation | 10.0 | 30 | < th | dose independent | rect. | 5 | 7 |
| 855 | 11.62 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 21 | 8 |
| 857 | 11.62 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 23 | 15 |
| 892 | 11.63 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 899 | 11.63 | atmosphere | 1010.0 | 10 | < th | dose dependent | sin | 6 | NA |
| 934 | 11.64 | wind | 1.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 935 | 11.64 | wind | 5.0 | 30 | < th | dose independent | rect. | 23 | 6 |
| 942 | 11.64 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 15 |
| 970 | 11.65 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 971 | 11.65 | humidity | 90.0 | 720 | > th | dose independent | rect. | 21 | 5 |
| 973 | 11.65 | radiation | 10.0 | 30 | < th | dose independent | rect. | 5 | 5 |
| 980 | 11.65 | humidity | 90.0 | 10 | < th | dose independent | rect. | 23 | 18 |
| 983 | 11.65 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |