BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0419100 Os05g0419100|AK121400
(258 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0419100 Similar to Nucleic acid binding protein-like 443 e-125
AK059311 443 e-125
Os01g0887700 Zinc finger, FYVE/PHD-type domain containing p... 362 e-100
Os11g0244800 Similar to Alfin-1 334 3e-92
Os02g0564100 Similar to EL3 protein 300 5e-82
Os04g0444900 Similar to Alfin-1 287 5e-78
Os07g0608400 Similar to nucleic acid binding protein [Oryza... 270 6e-73
Os05g0163100 Zinc finger, FYVE/PHD-type domain containing p... 255 3e-68
Os07g0233300 Similar to Nucleic acid binding protein-like 238 4e-63
Os03g0818300 Zinc finger, PHD-type domain containing protein 238 4e-63
Os01g0158800 108 3e-24
>Os05g0419100 Similar to Nucleic acid binding protein-like
Length = 258
Score = 443 bits (1139), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/258 (84%), Positives = 217/258 (84%)
Query: 1 MDGGSGGPYTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETW 60
MDGGSGGPYTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETW
Sbjct: 1 MDGGSGGPYTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETW 60
Query: 61 EVTLXXXXXXXXXXXXXLGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKE 120
EVTL LGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKE
Sbjct: 61 EVTLPAEEVPPEIPEPALGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKE 120
Query: 121 ARRRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSSKMQPRPESHSXXXXXXX 180
ARRRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSSKMQPRPESHS
Sbjct: 121 ARRRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSSKMQPRPESHSKAPKPPA 180
Query: 181 XXXXXXXXXXXXXXXXXXXXXNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARA 240
NTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARA
Sbjct: 181 PPKDDDESGDEYADEEEEERDNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARA 240
Query: 241 EHIKHYKCPDCGNKRARA 258
EHIKHYKCPDCGNKRARA
Sbjct: 241 EHIKHYKCPDCGNKRARA 258
>AK059311
Length = 258
Score = 443 bits (1139), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/258 (84%), Positives = 217/258 (84%)
Query: 1 MDGGSGGPYTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETW 60
MDGGSGGPYTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETW
Sbjct: 1 MDGGSGGPYTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETW 60
Query: 61 EVTLXXXXXXXXXXXXXLGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKE 120
EVTL LGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKE
Sbjct: 61 EVTLPAEEVPPEIPEPALGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKE 120
Query: 121 ARRRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSSKMQPRPESHSXXXXXXX 180
ARRRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSSKMQPRPESHS
Sbjct: 121 ARRRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSSKMQPRPESHSKAPKPPA 180
Query: 181 XXXXXXXXXXXXXXXXXXXXXNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARA 240
NTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARA
Sbjct: 181 PPKDDDESGDEYADEEEEERDNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARA 240
Query: 241 EHIKHYKCPDCGNKRARA 258
EHIKHYKCPDCGNKRARA
Sbjct: 241 EHIKHYKCPDCGNKRARA 258
>Os01g0887700 Zinc finger, FYVE/PHD-type domain containing protein
Length = 272
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/252 (74%), Positives = 199/252 (78%), Gaps = 2/252 (0%)
Query: 7 GPYTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETWEVTLXX 66
PY +RTAEEVFRD RGRRAGMIKALTTDVEKFY+LCDPEKENLCLYGYPNETWEVTL
Sbjct: 23 APYATRTAEEVFRDLRGRRAGMIKALTTDVEKFYKLCDPEKENLCLYGYPNETWEVTLPA 82
Query: 67 XXXXXXXXXXXLGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKEARRRLF 126
LGINFARDGMNEKDWLALVAVHSDSWLL+VAFYF ARFGFD+EARRRLF
Sbjct: 83 EEVPPEIPEPALGINFARDGMNEKDWLALVAVHSDSWLLSVAFYFGARFGFDREARRRLF 142
Query: 127 NMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSSKMQPRPESHSXXXXXXXXXXXXX 186
NMINNLPTIFEVVTGAAKKQ KEK PNS++K NKPSSK+Q + ES S
Sbjct: 143 NMINNLPTIFEVVTGAAKKQAKEKTPNSSSKSNKPSSKVQSKAESRSKSKLSAPKDEEGS 202
Query: 187 XXXXXXXXXXXXXXXNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARAEHIKHY 246
NTLCG+CGTNDGKDEFWICCD+CE+WYHGKCVKITPARAEHIK Y
Sbjct: 203 GDDEGEEEEDDHD--NTLCGTCGTNDGKDEFWICCDNCEKWYHGKCVKITPARAEHIKQY 260
Query: 247 KCPDCGNKRARA 258
KCPDC NKRARA
Sbjct: 261 KCPDCTNKRARA 272
>Os11g0244800 Similar to Alfin-1
Length = 254
Score = 334 bits (857), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 168/260 (64%), Positives = 189/260 (72%), Gaps = 8/260 (3%)
Query: 1 MDGGSGGPYTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETW 60
MDGG RT E+VFRDFR RRAGMIKALTTDVEKFYQ CDPEKENLCLYG PNETW
Sbjct: 1 MDGGGA----HRTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETW 56
Query: 61 EVTLXXXXXXXXXXXXXLGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKE 120
EV L LGINFARDGM+EKDWL+LVAVHSD+WLLAVAFYF ARFGFDKE
Sbjct: 57 EVNLPAEEVPPELPEPALGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKE 116
Query: 121 ARRRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSSKMQPRPESHSXXXXXXX 180
+R+RLF+MINNLPTI+EVVTG AKKQ+KEK P ++ K NK +K +PE +S
Sbjct: 117 SRKRLFSMINNLPTIYEVVTGTAKKQSKEKTPKTSGKSNKSGTKPSRQPEPNSRGPKMPP 176
Query: 181 XXXXXXXXXXXXXXXXXXXXXNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARA 240
NTLCG+CG N G+DEFWICCD+CE W+HGKCVKITPA+A
Sbjct: 177 PKDEDDSGGEEEEEEEDHE--NTLCGACGDNYGQDEFWICCDACETWFHGKCVKITPAKA 234
Query: 241 EHIKHYKCPDC--GNKRARA 258
EHIKHYKCP+C +KRARA
Sbjct: 235 EHIKHYKCPNCSSSSKRARA 254
>Os02g0564100 Similar to EL3 protein
Length = 267
Score = 300 bits (769), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 152/264 (57%), Positives = 175/264 (66%), Gaps = 36/264 (13%)
Query: 9 YTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETWEVTLXXXX 68
+ +R+AE+VFRDFR RRAG++KALTTDVEKFY+ CDPEKENLCLYG PNETW+VTL
Sbjct: 24 HNARSAEDVFRDFRARRAGIVKALTTDVEKFYRQCDPEKENLCLYGLPNETWDVTLPAEE 83
Query: 69 XXXXXXXXXLGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKEARRRLFNM 128
LGINFARDGM EKDWL+LVAVHSD+WLL+VAFYF ARFGFDKEARRRLF M
Sbjct: 84 VPPELPEPALGINFARDGMIEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKEARRRLFTM 143
Query: 129 INNLPTIFEVVTGAAKKQTK---------------EKAPNSTNKPNKPSSKMQPRPESHS 173
IN LPT++EVVTG AKKQTK K NS +KP KP QP+ E S
Sbjct: 144 INGLPTVYEVVTGIAKKQTKVSNGSSKSNKSNPKPSKQSNSNSKPAKPP---QPKDEEDS 200
Query: 174 XXXXXXXXXXXXXXXXXXXXXXXXXXXXNTLCGSCGTNDGKDEFWICCDSCERWYHGKCV 233
+CG+CG EFWICCD CE+W+HGKCV
Sbjct: 201 GPEGTEDEDQAY------------------MCGACGETYANGEFWICCDVCEKWFHGKCV 242
Query: 234 KITPARAEHIKHYKCPDCGNKRAR 257
+ITPA+AEHIK YKCP C +KR+R
Sbjct: 243 RITPAKAEHIKQYKCPGCSSKRSR 266
>Os04g0444900 Similar to Alfin-1
Length = 256
Score = 287 bits (734), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 142/265 (53%), Positives = 173/265 (65%), Gaps = 18/265 (6%)
Query: 1 MDGGSGGP---YTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPN 57
MDGG G + +R+ E+VF+DF GRR+G++KALT +VEKFY+ CDPEKENLCLYG PN
Sbjct: 1 MDGGYGSVTIVHDARSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPN 60
Query: 58 ETWEVTLXXXXXXXXXXXXXLGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGF 117
TW VTL LGINFARDGM EKDWL+L+AVHSDSWLL+VAFYF ARFGF
Sbjct: 61 GTWAVTLPADEVPPELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGF 120
Query: 118 DKEARRRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNK-----PNKPSSKMQPRPESH 172
DK+AR RLF M ++LPT+FEVV+G Q+K +S NK P +P+S +P+ +
Sbjct: 121 DKKARERLFMMTSSLPTVFEVVSGGVNTQSKTANGSSKNKSGSKPPKRPNSDSKPQKQVQ 180
Query: 173 SXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTLCGSCGTNDGKDEFWICCDSCERWYHGKC 232
+ T+CG+CG EFWICCD CE W+HGKC
Sbjct: 181 AKYEEENGGRGNGGDEDQA----------ETICGACGEAYANGEFWICCDICETWFHGKC 230
Query: 233 VKITPARAEHIKHYKCPDCGNKRAR 257
V+ITPA+AEHIKHYKCP C NKR R
Sbjct: 231 VRITPAKAEHIKHYKCPGCSNKRTR 255
>Os07g0608400 Similar to nucleic acid binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 278
Score = 270 bits (691), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 139/258 (53%), Positives = 167/258 (64%), Gaps = 19/258 (7%)
Query: 9 YTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETWEVTLXXXX 68
Y RT EEVFRDF+GRRAG+++ALT DVE F++ CDPEKENLCLYG+PNE WEV L
Sbjct: 5 YNPRTVEEVFRDFKGRRAGLVRALTADVEDFFRQCDPEKENLCLYGFPNEHWEVNLPAEE 64
Query: 69 XXXXXXXXXLGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKEARRRLFNM 128
LGINFARDGM EKDWL++VAVHSD+WLL+VAFYF ARFGFDK R+RLF M
Sbjct: 65 VPPELPEPALGINFARDGMQEKDWLSMVAVHSDAWLLSVAFYFGARFGFDKNDRKRLFGM 124
Query: 129 INNLPTIFEVVTGAAKKQTKEKAPNS---------------TNKPNKPSSKMQPRPESHS 173
IN+LPTIFEVV+G ++K K P++ +++P K QP+P +
Sbjct: 125 INDLPTIFEVVSG----KSKAKPPSANNHSNSKSKSSNKTKSSEPRAKQPKPQPQPPVKN 180
Query: 174 XXXXXXXXXXXXXXXXXXXXXXXXXXXXNTLCGSCGTNDGKDEFWICCDSCERWYHGKCV 233
TLCG+CG + G DEFWICCD CE+W+HGKCV
Sbjct: 181 EGREEEGGPDDEEGGGGGGGGGREEEHGETLCGACGESYGADEFWICCDICEKWFHGKCV 240
Query: 234 KITPARAEHIKHYKCPDC 251
KITPA+AEHIK YKCP C
Sbjct: 241 KITPAKAEHIKQYKCPSC 258
>Os05g0163100 Zinc finger, FYVE/PHD-type domain containing protein
Length = 258
Score = 255 bits (651), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 124/246 (50%), Positives = 155/246 (63%), Gaps = 12/246 (4%)
Query: 12 RTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETWEVTLXXXXXXX 71
R+ E++F+DFR RR +++ALT DVE FY CDPEKENLCLYGY NE W+V L
Sbjct: 24 RSVEDIFKDFRARRTAILRALTHDVEDFYAQCDPEKENLCLYGYANEAWQVALPAEEVPT 83
Query: 72 XXXXXXLGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKEARRRLFNMINN 131
LGINFARDGMN +DWLALVAVHSDSWL++VAFY+AAR ++ R+RLF M+N+
Sbjct: 84 ELPEPALGINFARDGMNRRDWLALVAVHSDSWLVSVAFYYAAR--LNRNDRKRLFGMMND 141
Query: 132 LPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSSKMQPRPESHSXXXXXXXXXXXXXXXXXX 191
LPT++EVV+G+ + + ++++ + NK SSK
Sbjct: 142 LPTVYEVVSGSRQSKERDRSGMDNSSRNKISSK----------HTSDVARVENNIKEEDE 191
Query: 192 XXXXXXXXXXNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARAEHIKHYKCPDC 251
TLCG+CG DEFWI CD CERWYHGKCVKITPA+AE IK YKCP C
Sbjct: 192 GYDEDDGDHSETLCGTCGGIYSADEFWIGCDVCERWYHGKCVKITPAKAESIKQYKCPSC 251
Query: 252 GNKRAR 257
+KR R
Sbjct: 252 SSKRPR 257
>Os07g0233300 Similar to Nucleic acid binding protein-like
Length = 244
Score = 238 bits (607), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 119/259 (45%), Positives = 158/259 (61%), Gaps = 45/259 (17%)
Query: 12 RTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETWEVTLXXXXXXX 71
RT E++F+DF GRRAG+++ALT DV++FY CDPEKENLCLYG+PN WEV L
Sbjct: 12 RTVEDIFKDFSGRRAGLVRALTVDVDEFYGFCDPEKENLCLYGHPNGRWEVALPAEEVPP 71
Query: 72 XXXXXXLGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKEARRRLFNMINN 131
LGINFARDGM+ +DWL+LVAVHSDSWLL+VAF+F AR ++ R+RLF++IN+
Sbjct: 72 ELPEPALGINFARDGMHRRDWLSLVAVHSDSWLLSVAFFFGARLNGNE--RKRLFSLIND 129
Query: 132 LPTIFEVVT--------------GAAKKQTKEKAPNSTNKPNKPSSKMQP-RPESHSXXX 176
PT+ E ++ G+ + + ++A + K ++P+ E HS
Sbjct: 130 HPTVLEALSDRKHGRDNKSGADNGSKSRHSGKRANDVQTKTSRPAVVDDGYDEEEHS--- 186
Query: 177 XXXXXXXXXXXXXXXXXXXXXXXXXNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKIT 236
TLCG+CG +EFWI CD CERW+HGKCV+IT
Sbjct: 187 -------------------------ETLCGTCGGRYNANEFWIGCDICERWFHGKCVRIT 221
Query: 237 PARAEHIKHYKCPDCGNKR 255
PA+AEHIKHYKCPDC + +
Sbjct: 222 PAKAEHIKHYKCPDCSSSK 240
>Os03g0818300 Zinc finger, PHD-type domain containing protein
Length = 247
Score = 238 bits (606), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 156/246 (63%), Gaps = 16/246 (6%)
Query: 12 RTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETWEVTLXXXXXXX 71
RT E++F+D+ RR +++ALT+DV++F+ LCDP+KENLCLYG N +WEV L
Sbjct: 14 RTVEDIFKDYSARRGALVRALTSDVDEFFGLCDPDKENLCLYGLANGSWEVALPAEEVPP 73
Query: 72 XXXXXXLGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKEARRRLFNMINN 131
LGINFARDGMN +DWL+LVAVHSDSWL++VAF+FAAR ++ R+RLFNMIN+
Sbjct: 74 ELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFFFAARLNGNE--RKRLFNMIND 131
Query: 132 LPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSSKMQPRPESHSXXXXXXXXXXXXXXXXXX 191
LPT++E + +K ++++ ++ +K S+K +
Sbjct: 132 LPTVYEALVD--RKHVRDRSGVDSSGKSKHSTKRTGEGQ------------VKRSRVVAE 177
Query: 192 XXXXXXXXXXNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARAEHIKHYKCPDC 251
T CG+CG +EFWI CD CERW+HGKCV+ITPA+AEHIKHYKCPDC
Sbjct: 178 EYEDDDEEHNETFCGTCGGLYNANEFWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDC 237
Query: 252 GNKRAR 257
+ ++
Sbjct: 238 SSSSSK 243
>Os01g0158800
Length = 150
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 68/102 (66%)
Query: 12 RTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETWEVTLXXXXXXX 71
R+ E++F DFR RR+ +++ALT D+EKF LC+P+ + LCLYG + TWEV
Sbjct: 34 RSVEDIFSDFRARRSAIVRALTEDLEKFAALCNPDLDCLCLYGNSDGTWEVAPPPEMVPP 93
Query: 72 XXXXXXLGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAA 113
LGINF+RD M DW+AL++V SDSWLLAVAF+ A
Sbjct: 94 ELPEPALGINFSRDTMYRSDWVALLSVFSDSWLLAVAFFHGA 135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,751,480
Number of extensions: 312120
Number of successful extensions: 975
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 965
Number of HSP's successfully gapped: 14
Length of query: 258
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 159
Effective length of database: 11,866,615
Effective search space: 1886791785
Effective search space used: 1886791785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)