Os07g0233300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nucleic acid binding protein-like.
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Os07g0233300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nucleic acid binding protein-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.71 | 0.307 | 9.31 | 0.619 | 1.01 | 0.68 | -0.486 | -1.97 | 0.0948 | 18.8 | 77 | 888 | -- | -- |
| 48.39 | 0.324 | 9.33 | 0.481 | 1.03 | 0.621 | 0.0885 | -- | 0.0543 | 18.8 | 76.98 | 842 | -- | -- |
| 43.08 | 0.306 | 9.32 | 0.606 | 0.955 | 0.678 | -- | -1.85 | 0.101 | 18.9 | 78.02 | 946 | -- | -- |
| 47.93 | 0.322 | 9.33 | 0.439 | 0.982 | 0.608 | -- | -- | 0.0799 | 18.9 | 81 | 914 | -- | -- |
| 75.54 | 0.405 | 9.29 | 0.601 | -- | 0.95 | -- | -1.69 | 0.104 | -- | 80 | 1280 | -- | -- |
| 54.97 | 0.348 | 9.33 | 0.416 | 0.805 | -- | -0.43 | -- | 0.0443 | 17.7 | -- | -- | -- | -- |
| 55.34 | 0.348 | 9.33 | 0.418 | 0.804 | -- | -- | -- | 0.0421 | 17.9 | -- | -- | -- | -- |
| 78.21 | 0.412 | 9.3 | 0.416 | -- | 0.879 | -- | -- | 0.0803 | -- | 81 | 1314 | -- | -- |
| 52.37 | 0.337 | 9.33 | -- | 0.948 | 0.635 | -- | -- | 0.0385 | 18.9 | 82 | 940 | -- | -- |
| 88.84 | 0.44 | 9.31 | 0.393 | -- | -- | -- | -- | 0.0236 | -- | -- | -- | -- | -- |
| 59.93 | 0.362 | 9.34 | -- | 0.798 | -- | -- | -- | -0.00439 | 17.9 | -- | -- | -- | -- |
| 82.54 | 0.423 | 9.3 | -- | -- | 0.853 | -- | -- | 0.0605 | -- | 81.98 | 1314 | -- | -- |
| 92.92 | 0.45 | 9.32 | -- | -- | -- | -- | -- | -0.0201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.97 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 4 | 42.29 | humidity | 80 | 720 | > th | dose independent | rect. | 20 | 20 |
| 34 | 43.20 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 46 | 43.29 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 50 | 43.36 | humidity | 50 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 72 | 43.45 | humidity | 80 | 720 | > th | dose independent | sin | 2 | NA |
| 78 | 43.49 | humidity | 80 | 720 | > th | dose independent | rect. | 2 | 17 |
| 113 | 43.63 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 127 | 43.67 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 12 |
| 158 | 43.81 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 165 | 43.83 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 175 | 43.87 | radiation | 10 | 1440 | > th | dose independent | sin | 1 | NA |
| 176 | 43.87 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 23 |
| 188 | 43.94 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 256 | 44.19 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 6 |
| 261 | 44.20 | humidity | 80 | 720 | < th | dose independent | rect. | 23 | 23 |
| 263 | 44.21 | humidity | 80 | 720 | < th | dose independent | rect. | 2 | 20 |
| 265 | 44.21 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 23 |
| 267 | 44.22 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 273 | 44.23 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 13 |
| 277 | 44.24 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 16 |
| 279 | 44.24 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 289 | 44.26 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 291 | 44.26 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 23 |
| 296 | 44.27 | humidity | 80 | 720 | > th | dose independent | rect. | 4 | 23 |
| 301 | 44.29 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 21 |
| 356 | 44.44 | humidity | 80 | 720 | < th | dose independent | rect. | 7 | 20 |
| 368 | 44.45 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 23 |
| 371 | 44.46 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 10 |
| 402 | 44.48 | humidity | 80 | 720 | < th | dose independent | no | NA | NA |
| 412 | 44.49 | humidity | 60 | 720 | > th | dose dependent | rect. | 5 | 12 |
| 425 | 44.50 | humidity | 90 | 720 | < th | dose dependent | sin | 15 | NA |
| 489 | 44.56 | humidity | 60 | 720 | > th | dose dependent | sin | 1 | NA |
| 495 | 44.57 | humidity | 80 | 720 | < th | dose independent | sin | 19 | NA |
| 513 | 44.60 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 536 | 44.64 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 650 | 44.67 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 661 | 44.69 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 15 |
| 666 | 44.69 | humidity | 90 | 720 | < th | dose dependent | rect. | 10 | 18 |
| 685 | 44.72 | humidity | 80 | 720 | > th | dose independent | sin | 9 | NA |
| 711 | 44.76 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 786 | 44.82 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 11 |
| 807 | 44.84 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 812 | 44.85 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 826 | 44.86 | radiation | 10 | 90 | < th | dose independent | rect. | 5 | 23 |
| 867 | 44.91 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 904 | 44.97 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 911 | 44.99 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 954 | 45.04 | humidity | 90 | 720 | < th | dose dependent | rect. | 14 | 14 |
| 977 | 45.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 982 | 45.07 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |