Os11g0244800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alfin-1.
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Os11g0244800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Alfin-1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.98 | 0.23 | 13.4 | -0.215 | 0.587 | 0.623 | -0.325 | -5.14 | 0.316 | 16.6 | 26.88 | 4463 | -- | -- |
| 28.15 | 0.249 | 13.3 | 0.887 | 0.528 | 0.218 | -0.348 | -- | 0.472 | 16.9 | 23.64 | 47520 | -- | -- |
| 24.2 | 0.229 | 13.4 | -0.219 | 0.58 | 0.607 | -- | -4.96 | 0.311 | 16.8 | 26.81 | 4608 | -- | -- |
| 26.84 | 0.243 | 13.3 | 0.829 | 0.497 | 0.488 | -- | -- | 0.43 | 17.4 | 14.63 | 3891 | -- | -- |
| 41.37 | 0.3 | 13.4 | -0.431 | -- | 0.813 | -- | -6.44 | 0.331 | -- | 27.87 | 4807 | -- | -- |
| 28.92 | 0.252 | 13.3 | 0.926 | 0.602 | -- | -0.317 | -- | 0.501 | 16.7 | -- | -- | -- | -- |
| 29.17 | 0.253 | 13.3 | 0.924 | 0.602 | -- | -- | -- | 0.499 | 16.8 | -- | -- | -- | -- |
| 33.95 | 0.271 | 13.3 | 0.713 | -- | 0.831 | -- | -- | 0.353 | -- | 17.9 | 249 | -- | -- |
| 33.31 | 0.269 | 13.3 | -- | 0.609 | 0.712 | -- | -- | 0.194 | 16.7 | 8.911 | 41908 | -- | -- |
| 48.33 | 0.325 | 13.3 | 0.901 | -- | -- | -- | -- | 0.484 | -- | -- | -- | -- | -- |
| 51.68 | 0.336 | 13.3 | -- | 0.585 | -- | -- | -- | 0.396 | 16.8 | -- | -- | -- | -- |
| 46.35 | 0.317 | 13.3 | -- | -- | 1.21 | -- | -- | 0.249 | -- | 13.54 | 249 | -- | -- |
| 69.77 | 0.39 | 13.3 | -- | -- | -- | -- | -- | 0.384 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.13 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 2 | 20.69 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 3 | 20.87 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 8 | 21.66 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 9 | 21.67 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 10 | 22.12 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 13 | 22.30 | humidity | 70 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 16 | 22.44 | humidity | 70 | 43200 | < th | dose dependent | sin | 7 | NA |
| 20 | 22.52 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 14 |
| 29 | 22.57 | humidity | 70 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 56 | 22.69 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 71 | 22.75 | humidity | 60 | 43200 | > th | dose independent | sin | 7 | NA |
| 75 | 22.76 | humidity | 70 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 78 | 22.77 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 87 | 22.83 | radiation | 10 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 88 | 22.83 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 16 |
| 95 | 22.85 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 116 | 22.90 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 17 |
| 125 | 22.93 | radiation | 10 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 130 | 22.94 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 131 | 22.94 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 136 | 22.95 | humidity | 60 | 43200 | < th | dose independent | sin | 6 | NA |
| 165 | 22.96 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 168 | 22.97 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 173 | 22.98 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 177 | 22.99 | radiation | 10 | 43200 | > th | dose independent | sin | 11 | NA |
| 184 | 23.00 | humidity | 70 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 189 | 23.01 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 195 | 23.02 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 230 | 23.06 | humidity | 70 | 43200 | > th | dose independent | rect. | 24 | 10 |
| 234 | 23.06 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 238 | 23.06 | radiation | 20 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 242 | 23.07 | radiation | 20 | 43200 | > th | dose independent | sin | 1 | NA |
| 246 | 23.07 | radiation | 20 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 248 | 23.07 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 289 | 23.08 | radiation | 20 | 43200 | > th | dose independent | no | NA | NA |
| 290 | 23.08 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 394 | 23.08 | radiation | 20 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 395 | 23.08 | radiation | 20 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 449 | 23.10 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 20 |
| 472 | 23.11 | radiation | 20 | 43200 | > th | dose independent | rect. | 16 | 20 |
| 493 | 23.13 | radiation | 10 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 497 | 23.14 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 539 | 23.15 | radiation | 40 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 562 | 23.15 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 4 |
| 565 | 23.16 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 588 | 23.16 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 589 | 23.16 | wind | 1 | 43200 | < th | dose dependent | rect. | 14 | 12 |
| 598 | 23.17 | humidity | 50 | 43200 | > th | dose dependent | rect. | 8 | 3 |
| 600 | 23.17 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 10 |
| 610 | 23.18 | radiation | 30 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 611 | 23.18 | radiation | 30 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 651 | 23.20 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 711 | 23.22 | radiation | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 757 | 23.25 | wind | 3 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 760 | 23.25 | radiation | 20 | 43200 | < th | dose dependent | rect. | 7 | 4 |
| 764 | 23.25 | humidity | 70 | 43200 | < th | dose dependent | rect. | 7 | 16 |
| 776 | 23.26 | radiation | 40 | 43200 | > th | dose independent | sin | 15 | NA |
| 798 | 23.26 | radiation | 20 | 43200 | < th | dose dependent | rect. | 7 | 9 |
| 800 | 23.26 | humidity | 70 | 43200 | < th | dose dependent | rect. | 7 | 14 |
| 899 | 23.28 | humidity | 70 | 43200 | < th | dose dependent | no | NA | NA |
| 960 | 23.29 | radiation | 30 | 43200 | < th | dose dependent | rect. | 9 | 6 |
| 965 | 23.29 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 12 |
| 981 | 23.30 | radiation | 20 | 43200 | > th | dose independent | rect. | 13 | 2 |