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Os04g0444900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Alfin-1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0126) R2 : 0.679
β1 : 1.16 (0.0463) R2dD : 0.456 R2D : 0.418
β2 : 0.548 (0.031) R2dC : 0.22 R2C : 0.23
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.172 (0.027) R2dN8 : 0.0385 R2N8 : -0.0107
σ : 0.238
deviance : 25.73
__
_____
C
peak time of C : 2.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.06 0.221 12 1.21 0.252 0.458 -0.151 -0.411 0.214 7.41 0.000484 126 -- --
22.92 0.223 12 1.22 0.241 0.462 0.118 -- 0.214 7.82 0.03 127 -- --
22.09 0.219 12 1.21 0.252 0.458 -- -0.379 0.21 7.45 0.0308 127 -- --
22.93 0.223 12 1.2 0.25 0.462 -- -- 0.211 7.57 0.03 127 -- --
24.51 0.231 12 1.21 -- 0.442 -- -0.412 0.212 -- 0.04868 184 -- --
25.17 0.235 12 1.15 0.549 -- -0.397 -- 0.17 2.56 -- -- -- --
25.73 0.238 12 1.16 0.548 -- -- -- 0.172 2.6 -- -- -- --
25.05 0.233 12 1.21 -- 0.443 -- -- 0.202 -- 0.03 184 -- --
60.65 0.365 12.1 -- 0.485 0.12 -- -- 0.0482 3.43 2.763 85 -- --
43.34 0.308 12 1.18 -- -- -- -- 0.186 -- -- -- -- --
60.95 0.365 12.1 -- 0.571 -- -- -- 0.0436 2.63 -- -- -- --
62.92 0.369 12.1 -- -- 0.528 -- -- 0.0685 -- 10 415 -- --
80.03 0.418 12.1 -- -- -- -- -- 0.0552 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.48 temperature 15.0 270 > th dose dependent rect. 9 2
3 20.58 temperature 15.0 30 > th dose independent rect. 9 21
5 20.59 temperature 20.0 90 > th dose dependent rect. 9 4
6 20.61 temperature 25.0 90 > th dose independent rect. 9 5
9 20.65 atmosphere 995.0 30 > th dose independent rect. 9 21
10 20.68 temperature 20.0 30 > th dose independent rect. 6 3
16 20.75 radiation 1.0 90 > th dose independent rect. 5 4
19 20.77 wind 1.0 30 > th dose independent rect. 6 3
20 20.77 atmosphere 995.0 30 > th dose dependent rect. 6 3
22 20.80 temperature 25.0 270 > th dose independent rect. 9 2
39 20.85 temperature 10.0 1440 > th dose independent rect. 7 3
42 20.85 atmosphere 995.0 1440 > th dose independent rect. 7 3
43 20.85 atmosphere 1015.0 1440 < th dose independent rect. 7 3
44 20.85 temperature 10.0 1440 > th dose independent rect. 10 21
47 20.85 precipitation 0.1 30 < th dose independent rect. 9 21
50 20.85 temperature 20.0 10 > th dose dependent rect. 9 5
53 20.85 precipitation 0.1 30 < th dose dependent rect. 9 21
54 20.86 wind 7.0 30 < th dose independent rect. 6 3
55 20.86 wind 9.0 10 < th dose independent rect. 9 21
63 20.88 temperature 10.0 30 > th dose independent rect. 6 3
65 20.88 temperature 30.0 30 < th dose independent rect. 6 3
66 20.88 humidity 50.0 30 > th dose independent rect. 6 3
68 20.88 atmosphere 995.0 30 > th dose independent rect. 6 3
69 20.88 atmosphere 1015.0 30 < th dose independent rect. 6 3
70 20.88 precipitation 0.1 30 < th dose independent rect. 6 3
73 20.88 precipitation 0.1 30 < th dose dependent rect. 6 3
77 20.91 temperature 25.0 10 > th dose independent rect. 9 6
78 20.91 temperature 10.0 30 > th dose dependent rect. 6 3
85 20.93 humidity 50.0 4320 > th dose independent rect. 7 3
111 21.00 wind 9.0 30 < th dose dependent rect. 6 3
112 21.01 humidity 90.0 30 < th dose independent rect. 6 3
115 21.02 radiation 40.0 30 < th dose independent rect. 6 3
116 21.02 wind 1.0 30 > th dose independent rect. 9 21
120 21.04 radiation 20.0 30 < th dose dependent sin 11 NA
129 21.08 humidity 50.0 270 > th dose independent rect. 13 19
136 21.12 radiation 1.0 90 < th dose independent sin 11 NA
138 21.12 radiation 1.0 90 > th dose independent rect. 15 18
140 21.16 radiation 1.0 90 > th dose independent sin 11 NA
156 21.24 humidity 50.0 270 > th dose independent rect. 14 17
158 21.25 humidity 50.0 10 > th dose independent rect. 9 21
162 21.27 radiation 1.0 90 < th dose independent rect. 19 12
172 21.32 atmosphere 1000.0 270 > th dose dependent rect. 4 3
178 21.33 radiation 1.0 30 > th dose dependent rect. 17 16
180 21.34 wind 7.0 90 < th dose independent rect. 9 6
186 21.35 radiation 1.0 90 < th dose dependent rect. 19 12
212 21.40 radiation 1.0 30 > th dose dependent rect. 5 4
224 21.40 radiation 1.0 90 < th dose dependent rect. 19 15
227 21.41 wind 7.0 270 < th dose independent rect. 9 2
235 21.42 radiation 1.0 90 > th dose independent rect. 9 6
242 21.43 temperature 15.0 10 > th dose independent rect. 20 10
244 21.43 humidity 50.0 30 > th dose dependent rect. 6 3
250 21.44 radiation 1.0 90 < th dose independent rect. 19 15
258 21.46 atmosphere 995.0 90 > th dose independent rect. 9 6
261 21.46 radiation 20.0 10 < th dose dependent rect. 20 10
292 21.51 temperature 10.0 90 > th dose independent rect. 9 6
293 21.51 atmosphere 1015.0 90 < th dose independent rect. 9 6
294 21.51 precipitation 0.1 90 < th dose independent rect. 9 6
295 21.51 temperature 10.0 90 > th dose independent rect. 15 18
298 21.51 precipitation 0.1 90 < th dose dependent rect. 9 6
302 21.52 wind 1.0 270 > th dose independent rect. 8 5
305 21.52 radiation 40.0 90 < th dose independent rect. 15 18
314 21.54 wind 9.0 270 < th dose dependent rect. 9 2
348 21.60 wind 9.0 90 < th dose independent rect. 15 18
349 21.60 atmosphere 1010.0 30 < th dose independent rect. 9 21
354 21.61 wind 1.0 270 > th dose independent rect. 4 3
361 21.61 radiation 40.0 90 < th dose dependent rect. 6 3
372 21.62 temperature 15.0 270 > th dose independent rect. 18 10
373 21.62 temperature 10.0 270 > th dose independent rect. 13 19
385 21.63 humidity 90.0 90 < th dose independent rect. 9 6
393 21.64 wind 1.0 270 > th dose independent rect. 7 21
412 21.66 temperature 10.0 270 > th dose independent rect. 9 2
413 21.66 atmosphere 995.0 270 > th dose independent rect. 9 2
414 21.66 atmosphere 1015.0 270 < th dose independent rect. 9 2
415 21.66 radiation 1.0 270 > th dose independent rect. 9 2
416 21.66 precipitation 0.1 270 < th dose independent rect. 9 2
421 21.66 atmosphere 995.0 270 > th dose independent rect. 17 10
425 21.66 temperature 10.0 270 > th dose independent rect. 11 22
427 21.66 precipitation 0.1 270 < th dose dependent rect. 9 2
436 21.67 wind 9.0 270 < th dose independent rect. 13 19
448 21.68 radiation 40.0 10 < th dose dependent rect. 6 3
481 21.72 wind 1.0 270 > th dose independent rect. 9 2
484 21.72 temperature 20.0 90 > th dose independent rect. 1 8
496 21.73 humidity 50.0 270 > th dose independent rect. 3 15
503 21.74 temperature 10.0 90 > th dose independent rect. 6 1
505 21.74 temperature 30.0 90 < th dose independent rect. 6 1
506 21.74 humidity 50.0 90 > th dose independent rect. 6 1
508 21.74 atmosphere 995.0 90 > th dose independent rect. 6 1
509 21.74 atmosphere 1015.0 90 < th dose independent rect. 6 1
510 21.74 radiation 40.0 90 < th dose independent rect. 6 1
511 21.74 precipitation 0.1 90 < th dose independent rect. 6 1
514 21.74 humidity 50.0 270 > th dose independent rect. 9 2
518 21.74 precipitation 0.1 90 < th dose dependent rect. 6 1
521 21.74 wind 9.0 270 < th dose dependent rect. 8 5
537 21.75 temperature 30.0 10 < th dose independent rect. 20 10
538 21.75 humidity 50.0 10 > th dose independent rect. 20 10
541 21.75 atmosphere 995.0 10 > th dose independent rect. 20 10
542 21.75 radiation 20.0 10 < th dose independent rect. 20 10
546 21.75 temperature 10.0 10 > th dose independent rect. 6 14
548 21.75 atmosphere 1015.0 10 < th dose independent rect. 6 14
552 21.75 wind 9.0 30 < th dose dependent rect. 9 21
562 21.76 wind 9.0 10 < th dose independent rect. 20 10
576 21.77 radiation 1.0 10 > th dose independent rect. 9 6
579 21.77 precipitation 0.1 10 < th dose independent rect. 6 14
583 21.77 wind 9.0 90 < th dose dependent rect. 6 1
586 21.77 precipitation 0.1 10 < th dose dependent rect. 6 14
588 21.78 humidity 90.0 30 < th dose independent rect. 4 5
590 21.78 precipitation 0.1 270 < th dose independent rect. 17 10
598 21.78 precipitation 0.1 270 < th dose dependent rect. 17 10
636 21.81 temperature 10.0 1440 > th dose independent rect. 21 10
639 21.81 temperature 30.0 1440 < th dose independent rect. 21 10
643 21.81 humidity 50.0 1440 > th dose independent rect. 21 10
648 21.81 atmosphere 995.0 1440 > th dose independent rect. 21 10
649 21.81 radiation 40.0 1440 < th dose independent rect. 21 10
653 21.81 temperature 10.0 1440 > th dose independent rect. 7 14
671 21.83 humidity 90.0 270 < th dose independent rect. 9 2
675 21.83 temperature 30.0 10 < th dose independent rect. 6 13
676 21.83 atmosphere 1015.0 90 < th dose independent rect. 15 18
690 21.84 humidity 50.0 270 > th dose independent rect. 8 5
691 21.84 wind 9.0 10 < th dose independent rect. 9 6
692 21.84 temperature 10.0 10 > th dose independent rect. 9 6
696 21.84 atmosphere 995.0 10 > th dose independent rect. 9 6
698 21.84 atmosphere 1015.0 10 < th dose independent rect. 9 6
700 21.84 precipitation 0.1 10 < th dose independent rect. 9 6
702 21.84 temperature 10.0 10 > th dose independent rect. 15 18
706 21.84 wind 9.0 270 < th dose independent rect. 11 22
714 21.84 precipitation 0.1 10 < th dose dependent rect. 9 6
723 21.85 temperature 10.0 1440 > th dose independent rect. 10 6
728 21.85 humidity 50.0 270 > th dose independent rect. 18 10
729 21.85 radiation 20.0 270 < th dose independent rect. 18 10
732 21.85 wind 1.0 10 > th dose independent rect. 6 14
733 21.85 temperature 10.0 270 > th dose independent rect. 4 14
734 21.85 atmosphere 1015.0 270 < th dose independent rect. 4 14
737 21.85 temperature 10.0 1440 > th dose independent rect. 16 18
765 21.86 precipitation 0.1 10 < th dose independent rect. 15 18
769 21.86 radiation 1.0 90 > th dose dependent rect. 6 1
770 21.86 radiation 40.0 90 < th dose dependent rect. 6 1
777 21.86 radiation 40.0 270 < th dose dependent rect. 18 10
778 21.86 precipitation 0.1 10 < th dose dependent rect. 15 18
779 21.86 temperature 10.0 30 > th dose dependent rect. 9 21
781 21.87 wind 9.0 1440 < th dose independent rect. 7 2
811 21.87 precipitation 0.1 90 < th dose independent rect. 15 18
826 21.87 precipitation 0.1 90 < th dose dependent rect. 15 18
839 21.88 wind 9.0 270 < th dose independent rect. 18 10
840 21.88 precipitation 0.1 30 < th dose independent rect. 20 10
848 21.88 precipitation 0.1 30 < th dose dependent rect. 20 10
853 21.89 radiation 10.0 270 < th dose independent rect. 4 3
882 21.90 temperature 30.0 90 < th dose dependent rect. 6 1
885 21.90 temperature 20.0 10 > th dose dependent rect. 2 7
903 21.91 precipitation 0.1 270 < th dose independent rect. 13 19
911 21.91 precipitation 0.1 270 < th dose dependent rect. 13 19
920 21.92 humidity 50.0 90 > th dose dependent rect. 6 1
923 21.92 radiation 40.0 270 < th dose dependent rect. 4 3
931 21.92 temperature 10.0 10 > th dose dependent rect. 15 18