BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0444900 Os04g0444900|AK063657
(256 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0444900 Similar to Alfin-1 461 e-130
Os02g0564100 Similar to EL3 protein 308 3e-84
Os11g0244800 Similar to Alfin-1 287 6e-78
Os05g0419100 Similar to Nucleic acid binding protein-like 275 3e-74
AK059311 275 3e-74
Os01g0887700 Zinc finger, FYVE/PHD-type domain containing p... 272 1e-73
Os05g0163100 Zinc finger, FYVE/PHD-type domain containing p... 270 8e-73
Os07g0233300 Similar to Nucleic acid binding protein-like 246 1e-65
Os03g0818300 Zinc finger, PHD-type domain containing protein 236 1e-62
Os07g0608400 Similar to nucleic acid binding protein [Oryza... 190 1e-48
Os01g0158800 134 5e-32
>Os04g0444900 Similar to Alfin-1
Length = 256
Score = 461 bits (1186), Expect = e-130, Method: Compositional matrix adjust.
Identities = 224/256 (87%), Positives = 224/256 (87%)
Query: 1 MDGGYGSVTIVHDARSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPN 60
MDGGYGSVTIVHDARSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPN
Sbjct: 1 MDGGYGSVTIVHDARSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPN 60
Query: 61 GTWAVTLPADEVPPELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGF 120
GTWAVTLPADEVPPELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGF
Sbjct: 61 GTWAVTLPADEVPPELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGF 120
Query: 121 DKKARERLFMMTSSLPTVFEVVSGGVNTQSKTAXXXXXXXXXXXXXXXXXXDSKPQKQVQ 180
DKKARERLFMMTSSLPTVFEVVSGGVNTQSKTA DSKPQKQVQ
Sbjct: 121 DKKARERLFMMTSSLPTVFEVVSGGVNTQSKTANGSSKNKSGSKPPKRPNSDSKPQKQVQ 180
Query: 181 AKYXXXXXXXXXXXXXXQAETICGACGEAYANGEFWICCDICETWFHGKCVRITPAKAEH 240
AKY QAETICGACGEAYANGEFWICCDICETWFHGKCVRITPAKAEH
Sbjct: 181 AKYEEENGGRGNGGDEDQAETICGACGEAYANGEFWICCDICETWFHGKCVRITPAKAEH 240
Query: 241 IKHYKCPGCSNKRTRE 256
IKHYKCPGCSNKRTRE
Sbjct: 241 IKHYKCPGCSNKRTRE 256
>Os02g0564100 Similar to EL3 protein
Length = 267
Score = 308 bits (788), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 166/248 (66%), Positives = 186/248 (75%), Gaps = 3/248 (1%)
Query: 10 IVHDARSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPNGTWAVTLPA 69
+ H+ARS EDVF+DF RR+GIVKALT +VEKFY+QCDPEKENLCLYGLPN TW VTLPA
Sbjct: 22 VHHNARSAEDVFRDFRARRAGIVKALTTDVEKFYRQCDPEKENLCLYGLPNETWDVTLPA 81
Query: 70 DEVPPELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGFDKKARERLF 129
+EVPPELPEPALGINFARDGM EKDWLSL+AVHSD+WLLSVAFYFGARFGFDK+AR RLF
Sbjct: 82 EEVPPELPEPALGINFARDGMIEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKEARRRLF 141
Query: 130 MMTSSLPTVFEVVSGGVNTQSKTAXXXXXXXXXX-XXXXXXXXDSKPQKQVQAKYXXXXX 188
M + LPTV+EVV+G Q+K + +SKP K Q K
Sbjct: 142 TMINGLPTVYEVVTGIAKKQTKVSNGSSKSNKSNPKPSKQSNSNSKPAKPPQPK--DEED 199
Query: 189 XXXXXXXXXQAETICGACGEAYANGEFWICCDICETWFHGKCVRITPAKAEHIKHYKCPG 248
+CGACGE YANGEFWICCD+CE WFHGKCVRITPAKAEHIK YKCPG
Sbjct: 200 SGPEGTEDEDQAYMCGACGETYANGEFWICCDVCEKWFHGKCVRITPAKAEHIKQYKCPG 259
Query: 249 CSNKRTRE 256
CS+KR+RE
Sbjct: 260 CSSKRSRE 267
>Os11g0244800 Similar to Alfin-1
Length = 254
Score = 287 bits (734), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 154/258 (59%), Positives = 179/258 (69%), Gaps = 10/258 (3%)
Query: 1 MDGGYGSVTIVHDARSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPN 60
MDGG R+PEDVF+DF RR+G++KALT +VEKFY+QCDPEKENLCLYGLPN
Sbjct: 1 MDGGGAH-------RTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPN 53
Query: 61 GTWAVTLPADEVPPELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGF 120
TW V LPA+EVPPELPEPALGINFARDGM EKDWLSL+AVHSD+WLL+VAFYFGARFGF
Sbjct: 54 ETWEVNLPAEEVPPELPEPALGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGF 113
Query: 121 DKKARERLFMMTSSLPTVFEVVSGGVNTQSKTAXXXXXXXXXXXXXXXXXX---DSKPQK 177
DK++R+RLF M ++LPT++EVV+G QSK +S+ K
Sbjct: 114 DKESRKRLFSMINNLPTIYEVVTGTAKKQSKEKTPKTSGKSNKSGTKPSRQPEPNSRGPK 173
Query: 178 QVQAKYXXXXXXXXXXXXXXQAETICGACGEAYANGEFWICCDICETWFHGKCVRITPAK 237
K T+CGACG+ Y EFWICCD CETWFHGKCV+ITPAK
Sbjct: 174 MPPPKDEDDSGGEEEEEEEDHENTLCGACGDNYGQDEFWICCDACETWFHGKCVKITPAK 233
Query: 238 AEHIKHYKCPGCSNKRTR 255
AEHIKHYKCP CS+ R
Sbjct: 234 AEHIKHYKCPNCSSSSKR 251
>Os05g0419100 Similar to Nucleic acid binding protein-like
Length = 258
Score = 275 bits (702), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 149/263 (56%), Positives = 179/263 (68%), Gaps = 14/263 (5%)
Query: 1 MDGGYGSVTIVHDARSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPN 60
MDGG G + +R+ E+VF+DF GRR+G++KALT +VEKFY+ CDPEKENLCLYG PN
Sbjct: 1 MDGGSGGP---YTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPN 57
Query: 61 GTWAVTLPADEVPPELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGF 120
TW VTLPA+EVPPE+PEPALGINFARDGM EKDWL+L+AVHSDSWLL+VAFYF ARFGF
Sbjct: 58 ETWEVTLPAEEVPPEIPEPALGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGF 117
Query: 121 DKKARERLFMMTSSLPTVFEVVSGGVNTQSKTAXXXXXXXXXXXXXXXXXXDSKPQKQVQ 180
DK+AR RLF M ++LPT+FEVV+G Q+K +P+ +
Sbjct: 118 DKEARRRLFNMINNLPTIFEVVTGAAKKQTK---EKAPNSTNKPNKPSSKMQPRPESHSK 174
Query: 181 AKYXXXXXXXXXXXXXXQAE--------TICGACGEAYANGEFWICCDICETWFHGKCVR 232
A A+ T+CG+CG EFWICCD CE W+HGKCV+
Sbjct: 175 APKPPAPPKDDDESGDEYADEEEEERDNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVK 234
Query: 233 ITPAKAEHIKHYKCPGCSNKRTR 255
ITPA+AEHIKHYKCP C NKR R
Sbjct: 235 ITPARAEHIKHYKCPDCGNKRAR 257
>AK059311
Length = 258
Score = 275 bits (702), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 149/263 (56%), Positives = 179/263 (68%), Gaps = 14/263 (5%)
Query: 1 MDGGYGSVTIVHDARSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPN 60
MDGG G + +R+ E+VF+DF GRR+G++KALT +VEKFY+ CDPEKENLCLYG PN
Sbjct: 1 MDGGSGGP---YTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPN 57
Query: 61 GTWAVTLPADEVPPELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGF 120
TW VTLPA+EVPPE+PEPALGINFARDGM EKDWL+L+AVHSDSWLL+VAFYF ARFGF
Sbjct: 58 ETWEVTLPAEEVPPEIPEPALGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGF 117
Query: 121 DKKARERLFMMTSSLPTVFEVVSGGVNTQSKTAXXXXXXXXXXXXXXXXXXDSKPQKQVQ 180
DK+AR RLF M ++LPT+FEVV+G Q+K +P+ +
Sbjct: 118 DKEARRRLFNMINNLPTIFEVVTGAAKKQTK---EKAPNSTNKPNKPSSKMQPRPESHSK 174
Query: 181 AKYXXXXXXXXXXXXXXQAE--------TICGACGEAYANGEFWICCDICETWFHGKCVR 232
A A+ T+CG+CG EFWICCD CE W+HGKCV+
Sbjct: 175 APKPPAPPKDDDESGDEYADEEEEERDNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVK 234
Query: 233 ITPAKAEHIKHYKCPGCSNKRTR 255
ITPA+AEHIKHYKCP C NKR R
Sbjct: 235 ITPARAEHIKHYKCPDCGNKRAR 257
>Os01g0887700 Zinc finger, FYVE/PHD-type domain containing protein
Length = 272
Score = 272 bits (696), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/244 (58%), Positives = 171/244 (70%), Gaps = 3/244 (1%)
Query: 15 RSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPNGTWAVTLPADEVPP 74
R+ E+VF+D GRR+G++KALT +VEKFYK CDPEKENLCLYG PN TW VTLPA+EVPP
Sbjct: 28 RTAEEVFRDLRGRRAGMIKALTTDVEKFYKLCDPEKENLCLYGYPNETWEVTLPAEEVPP 87
Query: 75 ELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGFDKKARERLFMMTSS 134
E+PEPALGINFARDGM EKDWL+L+AVHSDSWLLSVAFYFGARFGFD++AR RLF M ++
Sbjct: 88 EIPEPALGINFARDGMNEKDWLALVAVHSDSWLLSVAFYFGARFGFDREARRRLFNMINN 147
Query: 135 LPTVFEVVSGGVNTQSK-TAXXXXXXXXXXXXXXXXXXDSKPQKQVQA--KYXXXXXXXX 191
LPT+FEVV+G Q+K +S+ + ++ A
Sbjct: 148 LPTIFEVVTGAAKKQAKEKTPNSSSKSNKPSSKVQSKAESRSKSKLSAPKDEEGSGDDEG 207
Query: 192 XXXXXXQAETICGACGEAYANGEFWICCDICETWFHGKCVRITPAKAEHIKHYKCPGCSN 251
T+CG CG EFWICCD CE W+HGKCV+ITPA+AEHIK YKCP C+N
Sbjct: 208 EEEEDDHDNTLCGTCGTNDGKDEFWICCDNCEKWYHGKCVKITPARAEHIKQYKCPDCTN 267
Query: 252 KRTR 255
KR R
Sbjct: 268 KRAR 271
>Os05g0163100 Zinc finger, FYVE/PHD-type domain containing protein
Length = 258
Score = 270 bits (690), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 127/242 (52%), Positives = 161/242 (66%), Gaps = 7/242 (2%)
Query: 15 RSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPNGTWAVTLPADEVPP 74
RS ED+F+DF RR+ I++ALT +VE FY QCDPEKENLCLYG N W V LPA+EVP
Sbjct: 24 RSVEDIFKDFRARRTAILRALTHDVEDFYAQCDPEKENLCLYGYANEAWQVALPAEEVPT 83
Query: 75 ELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGFDKKARERLFMMTSS 134
ELPEPALGINFARDGM +DWL+L+AVHSDSWL+SVAFY+ AR ++ R+RLF M +
Sbjct: 84 ELPEPALGINFARDGMNRRDWLALVAVHSDSWLVSVAFYYAAR--LNRNDRKRLFGMMND 141
Query: 135 LPTVFEVVSGGVNTQSKTAXXXXXXXXXXXXXXXXXXDSKPQKQVQAKYXXXXXXXXXXX 194
LPTV+EVVSG ++ + ++ + ++ +
Sbjct: 142 LPTVYEVVSGSRQSKERDRSGMDNSSRNKISSKHTSDVARVENNIKEE-----DEGYDED 196
Query: 195 XXXQAETICGACGEAYANGEFWICCDICETWFHGKCVRITPAKAEHIKHYKCPGCSNKRT 254
+ET+CG CG Y+ EFWI CD+CE W+HGKCV+ITPAKAE IK YKCP CS+KR
Sbjct: 197 DGDHSETLCGTCGGIYSADEFWIGCDVCERWYHGKCVKITPAKAESIKQYKCPSCSSKRP 256
Query: 255 RE 256
R+
Sbjct: 257 RQ 258
>Os07g0233300 Similar to Nucleic acid binding protein-like
Length = 244
Score = 246 bits (628), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 164/243 (67%), Gaps = 11/243 (4%)
Query: 15 RSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPNGTWAVTLPADEVPP 74
R+ ED+F+DF GRR+G+V+ALT++V++FY CDPEKENLCLYG PNG W V LPA+EVPP
Sbjct: 12 RTVEDIFKDFSGRRAGLVRALTVDVDEFYGFCDPEKENLCLYGHPNGRWEVALPAEEVPP 71
Query: 75 ELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGFDKKARERLFMMTSS 134
ELPEPALGINFARDGM +DWLSL+AVHSDSWLLSVAF+FGAR ++ R+RLF + +
Sbjct: 72 ELPEPALGINFARDGMHRRDWLSLVAVHSDSWLLSVAFFFGARLNGNE--RKRLFSLIND 129
Query: 135 LPTVFEVVSGGVNTQSKTAXXXXXXXXXXXXXXXXXXDSKPQKQVQAKYXXXXXXXXXXX 194
PTV E +S + + + K VQ K
Sbjct: 130 HPTVLEALSDRKHGRDNKSGADNGSKSRHS--------GKRANDVQTKTSRPAVVDDGYD 181
Query: 195 XXXQAETICGACGEAYANGEFWICCDICETWFHGKCVRITPAKAEHIKHYKCPGC-SNKR 253
+ET+CG CG Y EFWI CDICE WFHGKCVRITPAKAEHIKHYKCP C S+K+
Sbjct: 182 EEEHSETLCGTCGGRYNANEFWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDCSSSKK 241
Query: 254 TRE 256
+R+
Sbjct: 242 SRQ 244
>Os03g0818300 Zinc finger, PHD-type domain containing protein
Length = 247
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 129/252 (51%), Positives = 163/252 (64%), Gaps = 14/252 (5%)
Query: 7 SVTIVHDARSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPNGTWAVT 66
+ + + R+ ED+F+D+ RR +V+ALT +V++F+ CDP+KENLCLYGL NG+W V
Sbjct: 6 AAQVASNPRTVEDIFKDYSARRGALVRALTSDVDEFFGLCDPDKENLCLYGLANGSWEVA 65
Query: 67 LPADEVPPELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGFDKKARE 126
LPA+EVPPELPEPALGINFARDGM +DWLSL+AVHSDSWL+SVAF+F AR ++ R+
Sbjct: 66 LPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFFFAARLNGNE--RK 123
Query: 127 RLFMMTSSLPTVFEVVSGGVNTQSKTAXXXXXXXXXXXXXXXXXXDSKPQKQVQAKYXXX 186
RLF M + LPTV+E + + + ++ +K + Q K
Sbjct: 124 RLFNMINDLPTVYEALVDRKHVRDRSGVDSSGKSKHS---------TKRTGEGQVKRSRV 174
Query: 187 XXXXXXXXXXXQAETICGACGEAYANGEFWICCDICETWFHGKCVRITPAKAEHIKHYKC 246
ET CG CG Y EFWI CDICE WFHGKCVRITPAKAEHIKHYKC
Sbjct: 175 VAEEYEDDDEEHNETFCGTCGGLYNANEFWIGCDICERWFHGKCVRITPAKAEHIKHYKC 234
Query: 247 PGC---SNKRTR 255
P C S+K+TR
Sbjct: 235 PDCSSSSSKKTR 246
>Os07g0608400 Similar to nucleic acid binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 278
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/142 (71%), Positives = 121/142 (85%)
Query: 12 HDARSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPNGTWAVTLPADE 71
++ R+ E+VF+DF GRR+G+V+ALT +VE F++QCDPEKENLCLYG PN W V LPA+E
Sbjct: 5 YNPRTVEEVFRDFKGRRAGLVRALTADVEDFFRQCDPEKENLCLYGFPNEHWEVNLPAEE 64
Query: 72 VPPELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGFDKKARERLFMM 131
VPPELPEPALGINFARDGMQEKDWLS++AVHSD+WLLSVAFYFGARFGFDK R+RLF M
Sbjct: 65 VPPELPEPALGINFARDGMQEKDWLSMVAVHSDAWLLSVAFYFGARFGFDKNDRKRLFGM 124
Query: 132 TSSLPTVFEVVSGGVNTQSKTA 153
+ LPT+FEVVSG + +A
Sbjct: 125 INDLPTIFEVVSGKSKAKPPSA 146
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 40/49 (81%), Positives = 43/49 (87%)
Query: 201 TICGACGEAYANGEFWICCDICETWFHGKCVRITPAKAEHIKHYKCPGC 249
T+CGACGE+Y EFWICCDICE WFHGKCV+ITPAKAEHIK YKCP C
Sbjct: 210 TLCGACGESYGADEFWICCDICEKWFHGKCVKITPAKAEHIKQYKCPSC 258
>Os01g0158800
Length = 150
Score = 134 bits (338), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 81/111 (72%)
Query: 6 GSVTIVHDARSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPNGTWAV 65
G + V RS ED+F DF RRS IV+ALT ++EKF C+P+ + LCLYG +GTW V
Sbjct: 25 GRSSRVTALRSVEDIFSDFRARRSAIVRALTEDLEKFAALCNPDLDCLCLYGNSDGTWEV 84
Query: 66 TLPADEVPPELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGA 116
P + VPPELPEPALGINF+RD M DW++L++V SDSWLL+VAF+ GA
Sbjct: 85 APPPEMVPPELPEPALGINFSRDTMYRSDWVALLSVFSDSWLLAVAFFHGA 135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,703,604
Number of extensions: 346145
Number of successful extensions: 735
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 730
Number of HSP's successfully gapped: 17
Length of query: 256
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 157
Effective length of database: 11,866,615
Effective search space: 1863058555
Effective search space used: 1863058555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)