BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0218000 Os11g0218000|AK072267
(364 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0218000 Eukaryotic transcription factor, DNA-binding d... 538 e-153
Os12g0194600 Basic-leucine zipper (bZIP) transcription fact... 187 9e-48
Os12g0194400 Conserved hypothetical protein 133 2e-31
Os01g0756200 Similar to VirE2-interacting protein VIP1 85 7e-17
Os02g0247100 Similar to BZIP protein BZO2H3 (Fragment) 80 2e-15
Os02g0538900 Eukaryotic transcription factor, DNA-binding d... 77 3e-14
Os01g0211800 Similar to VirE2-interacting protein VIP1 74 2e-13
Os09g0516200 Transcription factor RF2a. Splice isoform 2 65 1e-10
>Os11g0218000 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 364
Score = 538 bits (1387), Expect = e-153, Method: Compositional matrix adjust.
Identities = 282/364 (77%), Positives = 282/364 (77%)
Query: 1 MMMANAKLPKQALLXXXXXXXXXXXXXXXXXXXXXXIARPQGAPXXXXXXXXXXXQRTSS 60
MMMANAKLPKQALL IARPQGAP QRTSS
Sbjct: 1 MMMANAKLPKQALLPPRSPFPTAAAAAGPYAGDHGPIARPQGAPHHRHGHGHGHHQRTSS 60
Query: 61 ESFIEEQPSWLDDLLNEPETPVRQHGRAGHRRSSSDSXXXXXXXXXXXXXXXXXXXXXXX 120
ESFIEEQPSWLDDLLNEPETPVRQHGRAGHRRSSSDS
Sbjct: 61 ESFIEEQPSWLDDLLNEPETPVRQHGRAGHRRSSSDSFAMFDGGAAAGAYANGFEGMGGG 120
Query: 121 XXXXXXXXXXXVQEYYAKPSSFGRHQGRPWEQGMNNLVNYRQSGGPPMPAKEKVGGHHGS 180
VQEYYAKPSSFGRHQGRPWEQGMNNLVNYRQSGGPPMPAKEKVGGHHGS
Sbjct: 121 GGGGQAAPWGGVQEYYAKPSSFGRHQGRPWEQGMNNLVNYRQSGGPPMPAKEKVGGHHGS 180
Query: 181 PSVLRDHDHGMDRRSSDESGHDQKVGPERKEGVPPKHAQSEADTKRAKQQYAQRSRVRKL 240
PSVLRDHDHGMDRRSSDESGHDQKVGPERKEGVPPKHAQSEADTKRAKQQYAQRSRVRKL
Sbjct: 181 PSVLRDHDHGMDRRSSDESGHDQKVGPERKEGVPPKHAQSEADTKRAKQQYAQRSRVRKL 240
Query: 241 QYIAELERKVQALQSEGIDVSAEMEFLSQQNIMLDLENKALKQRLESLAQEQLIKRFQQE 300
QYIAELERKVQALQSEGIDVSAEMEFLSQQNIMLDLENKALKQRLESLAQEQLIKRFQQE
Sbjct: 241 QYIAELERKVQALQSEGIDVSAEMEFLSQQNIMLDLENKALKQRLESLAQEQLIKRFQQE 300
Query: 301 MFEREIGRLRSLYXXXXXXXXXXXXXXXLSRSNSRDLDSQFANLSLKHKDPNSGPLRTQS 360
MFEREIGRLRSLY LSRSNSRDLDSQFANLSLKHKDPNSGPLRTQS
Sbjct: 301 MFEREIGRLRSLYQQQQQQQKQPQPTTTLSRSNSRDLDSQFANLSLKHKDPNSGPLRTQS 360
Query: 361 SSIL 364
SSIL
Sbjct: 361 SSIL 364
>Os12g0194600 Basic-leucine zipper (bZIP) transcription factor domain containing
protein
Length = 150
Score = 187 bits (475), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 106/126 (84%), Gaps = 1/126 (0%)
Query: 230 QYAQRSRVRKLQYIAELERKVQALQSEGIDVSAEMEFLSQQNIMLDLENKALKQRLESLA 289
QYAQRSRVRKLQYIAELER+VQALQ+EG++VSAEM+FL QQNIMLDLENKALKQRLESL+
Sbjct: 16 QYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESLS 75
Query: 290 QEQLIKRFQQEMFEREIGRLRSLYXXXXXXXXXXXXXXXL-SRSNSRDLDSQFANLSLKH 348
QE LIKRFQQEMFEREIGRLRSL+ SRSNSRDLDSQFAN+SLKH
Sbjct: 76 QEHLIKRFQQEMFEREIGRLRSLFQQQQQQQHIPQQQGPTHSRSNSRDLDSQFANMSLKH 135
Query: 349 KDPNSG 354
DPNSG
Sbjct: 136 GDPNSG 141
>Os12g0194400 Conserved hypothetical protein
Length = 258
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 117/244 (47%), Gaps = 24/244 (9%)
Query: 3 MANAKLPKQALLXXXXXXXXXXXXXXXXXXXXX--XIARPQGAPXXXXXXXXXXXQRTSS 60
MANA+ KQALL IARP+ AP QRTSS
Sbjct: 1 MANARFQKQALLPPRSPFPAAVGAAPSPSPHAELGPIARPRDAPHRHGH------QRTSS 54
Query: 61 ES-FIEEQPSWLDDLLNEPETPVRQHGRAGHRRSSSDSXX----XXXXXXXXXXXXXXXX 115
ES I+EQPSWLDDLL EPE P R HGR GHRRSSSDS
Sbjct: 55 ESVLIDEQPSWLDDLLAEPEAPARPHGRPGHRRSSSDSFTLFDGGASAAAAGMYDNVFDG 114
Query: 116 XXXXXXXXXXXXXXXXVQEYYAKPSSFGRHQG---RPWEQGMNNLVNYRQSGGPPMPAKE 172
E++ + SSFGR QG RPW+ + GG P+P
Sbjct: 115 MRGRGGGGQQVGSWGAAPEFFPEQSSFGRPQGQGGRPWDSRLMLRQGGGGGGGMPVPMN- 173
Query: 173 KVGGHHGSPSVLRDHDHG-----MDRRSSDESGHDQKVGPERKEGVPPKHAQSEADTKRA 227
GGHHG PS DH HG +DR+ +S HDQ++G ERKEG +H+QSEADTKRA
Sbjct: 174 --GGHHGPPSAFGDHGHGSLPNGVDRKGPGDSAHDQRMGAERKEGAHLRHSQSEADTKRA 231
Query: 228 KQQY 231
KQ Y
Sbjct: 232 KQAY 235
>Os01g0756200 Similar to VirE2-interacting protein VIP1
Length = 265
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 59/87 (67%)
Query: 227 AKQQYAQRSRVRKLQYIAELERKVQALQSEGIDVSAEMEFLSQQNIMLDLENKALKQRLE 286
A +Q AQRSRVRKLQYI+ELER V LQ+E +S + FL QQ +L + N LKQR+
Sbjct: 146 ANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTILTVGNSHLKQRIA 205
Query: 287 SLAQEQLIKRFQQEMFEREIGRLRSLY 313
+LAQ+++ K QE +EI RLR +Y
Sbjct: 206 ALAQDKIFKDAHQEALRKEIERLRQVY 232
>Os02g0247100 Similar to BZIP protein BZO2H3 (Fragment)
Length = 269
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 58/87 (66%)
Query: 227 AKQQYAQRSRVRKLQYIAELERKVQALQSEGIDVSAEMEFLSQQNIMLDLENKALKQRLE 286
A +Q AQRSRVRKLQYI+ELER V LQ E +S + FL Q +L + N LKQR+
Sbjct: 149 ANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAFLDHQRSLLTVGNSHLKQRIA 208
Query: 287 SLAQEQLIKRFQQEMFEREIGRLRSLY 313
+LAQ+++ K QE ++EI RLR +Y
Sbjct: 209 ALAQDKIFKDAHQEALKKEIERLRQVY 235
>Os02g0538900 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 326
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 199 SGHDQKVGPERKEGVPPKHAQSEADTKRA-KQQYAQRSRVRKLQYIAELERKVQALQSEG 257
SG + VG G A AD +++ K++ QRSRVRKLQYIA+LER V +LQ+ G
Sbjct: 160 SGVNCNVGAANGTG-DTGDAVCHADQEKSLKRRSGQRSRVRKLQYIADLERTVDSLQNIG 218
Query: 258 IDVSAEMEFLSQQNIMLDLENKALKQRLESLAQEQLIKRFQQEMFEREIGRLRSL 312
D++ + L Q L +ENK L++++ SL Q +LIK Q +M ++E RL+ L
Sbjct: 219 ADLAVRVASLFQLRNALSMENKQLRRQITSLQQAKLIKDGQTQMLKKETERLKQL 273
>Os01g0211800 Similar to VirE2-interacting protein VIP1
Length = 330
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 211 EGVPPKHAQSEA--DTKRAKQ-----QYAQRSRVRKLQYIAELERKVQALQSEGIDVSAE 263
+G P S A D KR K+ Q AQRSRVRKLQYI+ELER V +LQ+E +S
Sbjct: 174 DGATPGQPASPATVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPR 233
Query: 264 MEFLSQQNIMLDLENKALKQRLESLAQEQLIKRFQQEMFERE 305
+ FL Q +L L N LKQR+ +LAQ+++ K E +RE
Sbjct: 234 VAFLDHQRSLLTLGNSHLKQRIAALAQDKIFKDGGTEEGDRE 275
>Os09g0516200 Transcription factor RF2a. Splice isoform 2
Length = 368
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 222 ADTKRAKQ-----QYAQRSRVRKLQYIAELERKVQALQSEGIDVSAEMEFLSQQNIMLDL 276
D KRAK+ Q A RS+ RK++YIAELERKVQ LQ+E +SA++ L + L
Sbjct: 168 VDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTT 227
Query: 277 ENKALKQRLESLAQEQLIKRFQQEMFEREIGRLR 310
EN LK RL+++ Q+ ++ + + E+ RL+
Sbjct: 228 ENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLK 261
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,728,229
Number of extensions: 374944
Number of successful extensions: 1280
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1272
Number of HSP's successfully gapped: 12
Length of query: 364
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 262
Effective length of database: 11,709,973
Effective search space: 3068012926
Effective search space used: 3068012926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)