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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0194400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.13 (0.0984) R2 : 0.177
β1 : -1.73 (0.353) R2dD : 0.288 R2D : -1.22
β2 : -- (--) R2dC : -- R2C : --
β3 : 304 (39.3) R2dE : 325 R2E : -321
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -1050 (137) R2dD*E : 320 R2D*E : -324
γ1 : 0.199 (0.0814) R2dN8 : 0.0145 R2N8 : -0.79
σ : 0.713
deviance : 234.43
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_____
C
peak time of C : --
E
wheather : wind
threshold : 1.037
memory length : 10
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 13
open length of G : 2.83

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
226.27 0.707 4.13 -1.76 0.39 305 -0.359 -1060 0.188 5.19 1.034 10 13 2.25
258.1 0.754 3.43 0.748 0.359 1.72 -0.486 -- 0.179 5.42 1.034 10 13 2.25
226.58 0.701 4.13 -1.76 0.388 305 -- -1060 0.19 5.09 1.031 10 13 2.25
246.89 0.732 3.43 0.732 0.397 2.94 -- -- 0.201 5.09 2.586 19 13.2 2.06
234.43 0.713 4.13 -1.73 -- 304 -- -1050 0.199 -- 1.037 10 13 2.83
261.04 0.757 3.43 0.766 0.349 -- -0.551 -- 0.176 5.48 -- -- -- --
261.79 0.758 3.43 0.765 0.345 -- -- -- 0.178 5.47 -- -- -- --
255.06 0.744 3.43 0.725 -- 2.93 -- -- 0.201 -- 2.24 19 13.2 2.17
259.94 0.751 3.44 -- 0.418 3.21 -- -- 0.117 4.91 2.523 19 13.2 2.2
268 0.765 3.44 0.776 -- -- -- -- 0.187 -- -- -- -- --
277.2 0.779 3.45 -- 0.358 -- -- -- 0.0929 5.38 -- -- -- --
264.81 0.758 3.45 -- -- 3.51 -- -- 0.123 -- 2.1 5 13.4 2.38
283.89 0.786 3.46 -- -- -- -- -- 0.1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 227.00 wind 1e+00 10 < th dose independent rect. 13 1
3 227.00 wind 1e+00 10 < th dose dependent rect. 13 1
5 229.53 atmosphere 1e+03 30 < th dose independent rect. 12 2
17 229.81 atmosphere 1e+03 10 < th dose dependent rect. 14 1
33 234.70 radiation 4e+01 10 > th dose dependent rect. 14 1
81 240.93 radiation 4e+01 10 > th dose independent rect. 14 1
119 241.07 atmosphere 1e+03 10 < th dose dependent rect. 13 10
137 241.83 atmosphere 1e+03 270 < th dose independent rect. 10 4
196 244.35 wind 1e+00 720 < th dose dependent rect. 11 2
203 244.58 humidity 7e+01 4320 > th dose independent rect. 10 1
205 244.69 humidity 7e+01 4320 > th dose dependent rect. 5 5
206 244.71 humidity 7e+01 4320 > th dose independent rect. 8 4
210 244.88 humidity 7e+01 4320 > th dose independent rect. 3 9
243 245.12 atmosphere 1e+03 10 < th dose independent rect. 12 9
244 245.13 humidity 7e+01 4320 < th dose independent rect. 8 5
246 245.15 radiation 4e+01 10 > th dose dependent sin 13 NA
254 245.23 humidity 7e+01 4320 < th dose independent rect. 10 2
303 245.48 humidity 7e+01 4320 > th dose independent sin 6 NA
354 245.78 temperature 2e+01 720 > th dose independent rect. 3 11
362 245.87 precipitation 1e-01 1440 > th dose independent rect. 5 2
365 245.88 atmosphere 1e+03 10 < th dose dependent rect. 13 14
394 245.94 humidity 7e+01 4320 < th dose independent sin 6 NA
425 246.08 humidity 9e+01 270 < th dose independent rect. 3 7
429 246.09 precipitation 1e-01 1440 > th dose dependent rect. 5 6
435 246.11 precipitation 1e-01 1440 < th dose independent rect. 5 8
436 246.11 precipitation 1e-01 1440 < th dose dependent rect. 5 8
477 246.31 precipitation 1e-01 1440 > th dose dependent rect. 5 2
484 246.37 temperature 2e+01 720 > th dose independent rect. 3 17
507 246.46 humidity 7e+01 90 > th dose dependent rect. 23 11
514 246.50 precipitation 1e-01 1440 > th dose independent rect. 5 6
543 246.61 humidity 8e+01 10 > th dose independent rect. 23 12
555 246.62 humidity 7e+01 4320 > th dose independent rect. 20 20
568 246.66 humidity 9e+01 30 < th dose dependent sin 9 NA
574 246.67 humidity 9e+01 4320 < th dose dependent rect. 23 13
589 246.69 humidity 9e+01 4320 < th dose dependent rect. 5 5
624 246.74 humidity 7e+01 4320 > th dose independent rect. 15 21
637 246.75 atmosphere 1e+03 10 < th dose dependent rect. 13 20
644 246.76 humidity 9e+01 4320 > th dose dependent rect. 8 1
650 246.77 wind 7e+00 720 > th dose dependent rect. 22 2
657 246.79 humidity 5e+01 4320 > th dose dependent sin 5 NA
673 246.85 precipitation 1e-01 1440 < th dose independent rect. 19 6
676 246.85 precipitation 1e-01 1440 < th dose dependent rect. 19 6
764 246.96 wind 5e+00 720 < th dose dependent rect. 11 2
770 246.98 humidity 9e+01 90 < th dose dependent rect. 20 15
777 247.00 wind 7e+00 720 > th dose independent rect. 22 2
810 247.06 humidity 8e+01 10 > th dose independent sin 7 NA
826 247.08 atmosphere 1e+03 90 < th dose dependent rect. 6 8
844 247.10 humidity 9e+01 4320 < th dose dependent sin 6 NA
862 247.15 humidity 7e+01 4320 < th dose independent rect. 15 22
864 247.16 wind 3e+00 270 < th dose dependent rect. 10 9
897 247.22 humidity 9e+01 270 < th dose independent rect. 7 1
925 247.27 atmosphere 1e+03 10 < th dose dependent rect. 7 8
960 247.33 humidity 5e+01 30 > th dose dependent sin 8 NA