BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0190700 Os11g0190700|Os11g0190700
(131 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0190700 Similar to Vacuolar sorting receptor 6 precurs... 204 2e-53
Os04g0611400 Similar to Vacuolar sorting receptor 7 precurs... 84 2e-17
Os06g0664300 Similar to Vacuolar sorting receptor 6 precurs... 74 3e-14
Os12g0116000 Similar to PV72 73 5e-14
Os03g0335300 Similar to Vacuolar sorting receptor homolog (... 70 5e-13
Os07g0680000 Similar to Vacuolar sorting receptor 1 precurs... 68 2e-12
Os10g0346600 Similar to Vacuolar sorting receptor 4 precurs... 64 4e-11
>Os11g0190700 Similar to Vacuolar sorting receptor 6 precursor (AtVSR6)
(Epidermal growth factor receptor-like protein 6)
(AtELP6) (BP80-like protein d) (AtBP80d)
Length = 131
Score = 204 bits (518), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/131 (79%), Positives = 104/131 (79%)
Query: 1 MRSSLAPRPCWWRTVSTSRCSXXXXXXXXXXXXXSFSSALITKQFGDALRAAADELVVRL 60
MRSSLAPRPCWWRTVSTSRCS SFSSALITKQFGDALRAAADELVVRL
Sbjct: 1 MRSSLAPRPCWWRTVSTSRCSRWTAPRRRPPTWRSFSSALITKQFGDALRAAADELVVRL 60
Query: 61 DWSESMTHPNELWTNSNDECGPRCDEQAAFVGAFCGXXXXXXXXXXXXXXPRRIPGDEAV 120
DWSESMTHPNELWTNSNDECGPRCDEQAAFVGAFCG PRRIPGDEAV
Sbjct: 61 DWSESMTHPNELWTNSNDECGPRCDEQAAFVGAFCGHAQLLEAALHHLVLPRRIPGDEAV 120
Query: 121 QGAVHQPRRLW 131
QGAVHQPRRLW
Sbjct: 121 QGAVHQPRRLW 131
>Os04g0611400 Similar to Vacuolar sorting receptor 7 precursor (AtVSR7)
(Epidermal growth factor receptor-like protein 3)
(AtELP3) (BP80-like protein f) (AtBP80f)
Length = 632
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 55/68 (80%), Gaps = 9/68 (13%)
Query: 38 SALITKQFGDALRAAAD----ELVVRLDWSESMTHPNE-----LWTNSNDECGPRCDEQA 88
SAL+TKQFGDALRAAA E+VVRLDW ESM HP+E LWTNSNDECGPRCDEQA
Sbjct: 154 SALVTKQFGDALRAAASAADDEVVVRLDWRESMPHPDERVEYELWTNSNDECGPRCDEQA 213
Query: 89 AFVGAFCG 96
AFVGAF G
Sbjct: 214 AFVGAFRG 221
>Os06g0664300 Similar to Vacuolar sorting receptor 6 precursor (AtVSR6)
(Epidermal growth factor receptor-like protein 6)
(AtELP6) (BP80-like protein d) (AtBP80d)
Length = 637
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 14/76 (18%)
Query: 35 SFSSALITKQFGDALR---------AAADELVVRLDWSESMTHPNE-----LWTNSNDEC 80
S SAL+ + FG++L+ AA E+VV+LDW ESM HP+E LWTNSNDEC
Sbjct: 154 SIPSALVNRAFGESLKRMSSPSPSSEAAVEVVVKLDWRESMPHPDERVEYELWTNSNDEC 213
Query: 81 GPRCDEQAAFVGAFCG 96
G RCDEQ FV F G
Sbjct: 214 GARCDEQMEFVRGFRG 229
>Os12g0116000 Similar to PV72
Length = 728
Score = 73.2 bits (178), Expect = 5e-14, Method: Composition-based stats.
Identities = 38/70 (54%), Positives = 45/70 (64%), Gaps = 8/70 (11%)
Query: 35 SFSSALITKQFGDALRAAADE---LVVRLDWSESMTHPNE-----LWTNSNDECGPRCDE 86
+ SALITK FGD L+ A D + V LDW ES+ HP+E WTNSNDECGP+CD
Sbjct: 254 TIPSALITKSFGDKLKKAIDNGDMVNVNLDWRESLPHPDERVEYEFWTNSNDECGPKCDS 313
Query: 87 QAAFVGAFCG 96
Q FV +F G
Sbjct: 314 QIDFVKSFKG 323
>Os03g0335300 Similar to Vacuolar sorting receptor homolog (Fragment)
Length = 628
Score = 69.7 bits (169), Expect = 5e-13, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 45/70 (64%), Gaps = 8/70 (11%)
Query: 35 SFSSALITKQFGDALRAAA---DELVVRLDWSESMTHPNE-----LWTNSNDECGPRCDE 86
+ S LITK+ GD L+ +A D + V LDW ES+ HP+E WTNSNDECGP+CD
Sbjct: 147 TIPSVLITKKLGDDLKKSAENGDMVSVLLDWRESLPHPDERVEYEFWTNSNDECGPKCDM 206
Query: 87 QAAFVGAFCG 96
Q FV +F G
Sbjct: 207 QMDFVKSFRG 216
>Os07g0680000 Similar to Vacuolar sorting receptor 1 precursor (AtVSR1)
(Epidermal growth factor receptor-like protein 1)
(AtELP1) (AtELP) (BP80-like protein b) (AtBP80b) (Spot 3
protein)
Length = 626
Score = 68.2 bits (165), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/67 (53%), Positives = 43/67 (64%), Gaps = 8/67 (11%)
Query: 38 SALITKQFGDALRAA---ADELVVRLDWSESMTHPNE-----LWTNSNDECGPRCDEQAA 89
SAL+TK+FGD L+ A D + V LDW ES+ HP+E WTNSNDECG +CD Q
Sbjct: 149 SALVTKKFGDDLKKALENGDMVNVLLDWRESLPHPDERVEYEFWTNSNDECGAKCDMQMN 208
Query: 90 FVGAFCG 96
FV F G
Sbjct: 209 FVRNFRG 215
>Os10g0346600 Similar to Vacuolar sorting receptor 4 precursor (AtVSR4)
(Epidermal growth factor receptor-like protein 2b)
(AtELP2b) (BP80-like protein a) (AtBP80a)
Length = 631
Score = 63.5 bits (153), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 45/70 (64%), Gaps = 8/70 (11%)
Query: 35 SFSSALITKQFGDALRAAAD--ELV-VRLDWSESMTHPN-----ELWTNSNDECGPRCDE 86
+ SALI K+FG+ L+ A E+V V LDW E++ HP+ ELWTNSNDECGP+CD
Sbjct: 152 TIPSALIDKKFGEQLKKAIKDGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGPKCDM 211
Query: 87 QAAFVGAFCG 96
F+ F G
Sbjct: 212 LMNFLKEFKG 221
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.131 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,768,616
Number of extensions: 106103
Number of successful extensions: 184
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 7
Length of query: 131
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 42
Effective length of database: 12,388,755
Effective search space: 520327710
Effective search space used: 520327710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 150 (62.4 bits)